Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0361
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    29   0.64 
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   2.0  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    26   4.5  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   6.0  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.0  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    25   7.9  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    25   7.9  

>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 464 LMEQFVRLRDGDRFWYENPSVFKPDQLRQIKETSL 568
           L + +  L   DR  Y N + + PD++++IKE  L
Sbjct: 760 LADNYTLLSKHDRAMYNNYADYSPDKIKEIKEKEL 794


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 515 FHTKIDRHRVNEQIAPLINI*IRDRLCHLQPDLLKFLLPKHLY 387
           +H   D   +   + PL N  + +    ++P+L K +LP H+Y
Sbjct: 319 YHCSRDEGTIERHLPPLFNFNLAE--LSIRPNLNKAILPPHVY 359


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 14  ENFETIPQGHLLLRNAFFSPWRLVDEGGVDPLLRGMFTTPAKLKTSKQNLNSE 172
           + F   P G ++   ++ S W   ++  +    RGMFT P +L     +LN E
Sbjct: 269 QTFGNAPDGRVI-SISWASNWNYTNDVPMRMKHRGMFTIPRELTLCYTHLNQE 320


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 218 LAAINIQ-RGRDHAIPPYTKWRQFCNMSEVNDFDDLSGEISDKEVRDKLQELYGSV 382
           LA I  Q R  +  +P Y   R + + S     + LS E   +E+RDKLQ  + S+
Sbjct: 682 LADIPFQKRDAEFILPSYFDIRLYNDCSLKYSLNTLSQEKILRELRDKLQNDHSSI 737


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 443 RLCHLQPDLLKFLLPKHLYCELIR---KAPVICPLLLYRLF 330
           RLC L PD +  L  KH   + +R   K      +LLY +F
Sbjct: 277 RLCELHPDAINSLDEKHQLFDAVRERMKTNDATSILLYGVF 317


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 536 DQLRQIKETSLARILCDNGDNIDTISENVFYLPEVQDGLVSCE 664
           ++ ++I    +  ++  +G   DT SENV Y P  +  L   E
Sbjct: 286 NEYKRIFGPKVLSLVVTDGQEPDTYSENVHYTPNFKGALAYLE 328


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +2

Query: 17  NFETIPQGHLLLRNAFFSPWRLVDEGGVDPLLRGMFTTPAKLKTSKQN 160
           N   +    + LRN+    W+++      P  +    TP K+KT   N
Sbjct: 202 NISHVKNPMVFLRNSVLKGWKVIGTKPALPDNKDQIYTPHKIKTELMN 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,542
Number of Sequences: 5004
Number of extensions: 61028
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)