Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0361
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0196 - 15374814-15374997,15375304-15375547,15376035-153762... 51 1e-06
03_01_0117 + 925850-925988,926075-926494,926607-926785,927568-92... 30 2.0
10_05_0104 + 9190779-9191847,9192544-9193332,9193652-9194049 29 3.6
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 29 4.7
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259... 29 4.7
02_01_0411 - 2998806-3000938 29 4.7
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629... 28 8.3
06_01_0156 + 1171717-1174140 28 8.3
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 8.3
>12_02_0196 -
15374814-15374997,15375304-15375547,15376035-15376237,
15377275-15377502,15377674-15377819,15378020-15378233,
15378410-15378543,15378986-15379135,15379892-15380155,
15380962-15381051
Length = 618
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/103 (26%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Frame = +2
Query: 212 LDLAAINIQRGRDHAIPPYTKWRQFCNMSEVNDFDDLSGEISDKEVRDKLQELYG-SVHN 388
+DLAA+ + R R+ ++P Y ++R+ + + ++DL+ SDK+ + ++ +YG V
Sbjct: 470 IDLAALEVYRDRERSVPRYNEFRRRLFLIPIKSWEDLT---SDKDAIETIRAIYGDDVEK 526
Query: 389 IDVWVGGILEDQVEGGKVGPLFRCLLMEQFVRLRDGDRFWYEN 517
+D+ VG + E +++G + + + R + DRF+ N
Sbjct: 527 LDLLVGLMAEKKIKGFAISETAFNIFILMASRRLEADRFFTSN 569
>03_01_0117 +
925850-925988,926075-926494,926607-926785,927568-927686,
928180-928498
Length = 391
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 189 NSFSVSSELRFCLDVFNFAGVVNIPRSKGSTPPSSTNLHG-EKNAL 55
N FS S LR C ++ NF + RS PP + + HG ++ AL
Sbjct: 50 NEFSKSICLRICPEIANFTSAEEVSRSP-PQPPHAESSHGVQRKAL 94
>10_05_0104 + 9190779-9191847,9192544-9193332,9193652-9194049
Length = 751
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 533 PDQLRQIKETSLARILCDNGDNIDTISENVFYLPEVQDGLVSCEDLPSMDLRF 691
PD+L I + A I+ ++G +TI N+F +P + GL C D S + F
Sbjct: 669 PDKLSPIVD---AAIIANSGGGQETI--NMFIVPVAKIGLACCRDNASQRMNF 716
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 56 NAFFSPWRLVDEGGVDPLLRGMFT 127
N F PW V+ GG+D L +G T
Sbjct: 36 NKQFKPWNKVERGGLDDLEKGKMT 59
>08_02_0098 -
12324664-12324822,12325430-12325543,12325649-12325921,
12326124-12326354,12326444-12326594,12326680-12326759,
12326839-12326913,12326992-12327093,12328000-12328121,
12329726-12329791,12330158-12330201,12330850-12330898,
12330967-12331087,12334631-12334735
Length = 563
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 548 QIKETSLARILCDNGDNIDTIS-ENVFYLPEVQDGLVSCEDLPSMDLRFWAD 700
QI+ TSL ++L + D +NV + ++S EDLP MD+ AD
Sbjct: 405 QIQLTSLEKVLKTESNGFDVNQRKNVIMRGVLSVTVISAEDLPPMDVMGKAD 456
>02_01_0411 - 2998806-3000938
Length = 710
Score = 28.7 bits (61), Expect = 4.7
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 95 GVDPLLRGMFTTPAKLKTSKQNLNSELTEKLFYSAHAVALDLAAINIQRGRDHAIPPYTK 274
GV P+ G L S NLN E+ E + + + LDL + N G AIPP
Sbjct: 561 GVIPMEIGELKELVSLNLSFNNLNGEIPESISNLKNLMVLDL-SYNHLTG---AIPPAMV 616
Query: 275 WRQFCNMSEVN-DFDDLSGEI 334
F +SE N ++DL G +
Sbjct: 617 NLHF--LSEFNVSYNDLKGPV 635
>12_02_0618 -
21262021-21262117,21262429-21262466,21262933-21262986,
21263274-21263438,21263523-21263759,21263857-21263918,
21264543-21264656,21264816-21264942,21266200-21266218,
21266338-21266428,21266932-21267094,21267182-21267330,
21268147-21268287,21268368-21268533,21268568-21268631,
21268729-21269084,21269759-21269977,21270328-21270433,
21270713-21270942
Length = 865
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 8 YDENFETIPQGHLLLRNAFFSPWRLVDEGGVDPLLRGMFTTPAKL 142
YDE + +G + RN F +++V GV L +G F T A+L
Sbjct: 798 YDEAKQRECKGARVYRNGFHCGYQVVVTEGVTSLYKGGFATFARL 842
>06_01_0156 + 1171717-1174140
Length = 807
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 518 PSVFKPDQLRQIKETSLARILCDNGDNIDTISENVFYLPEVQDG 649
P+V P Q++Q +A+ L D GD + ++E+ LP G
Sbjct: 546 PAVSVPCQVKQSIAEYMAKSLYDGGDGMSAVAEHPELLPFCASG 589
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 319 IVKVVNFTHITKLTPLSVWRYSVVSAPLYINGS*IKSYSMCA 194
+VK+ +F TKLT + +SVV P ++ I+ +CA
Sbjct: 172 LVKLADFGVATKLTEADINTHSVVGTPYWMAPEVIEMSGVCA 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,208,836
Number of Sequences: 37544
Number of extensions: 361025
Number of successful extensions: 854
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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