Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0361
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0) 204 5e-53
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.) 181 6e-46
SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0) 148 4e-36
SB_26887| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 7e-32
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8) 30 2.1
SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0) 28 6.4
SB_6982| Best HMM Match : Plasmodium_HRP (HMM E-Value=5.5) 28 6.4
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
Length = 647
Score = 204 bits (498), Expect = 5e-53
Identities = 90/167 (53%), Positives = 124/167 (74%), Gaps = 1/167 (0%)
Frame = +2
Query: 2 HRYDENFETIPQGHLLLRNAFFSPWRLVDEGGVDPLLRGMFTTPAKLKTSKQNL-NSELT 178
+R + +F IP+G++ L AFFSP+R+V+EGG+DP+LRG+F +K + + L N+ELT
Sbjct: 480 NRLNSSFLPIPEGNIPLHKAFFSPYRIVNEGGIDPVLRGLFAEASKSRENSDELVNTELT 539
Query: 179 EKLFYSAHAVALDLAAINIQRGRDHAIPPYTKWRQFCNMSEVNDFDDLSGEISDKEVRDK 358
E+LF AHAVALDL A+NIQRGRDHA+P Y WR+ CN+S FDDL EIS ++R +
Sbjct: 540 ERLFEMAHAVALDLGALNIQRGRDHALPGYNSWRKLCNLSVAESFDDLKNEISSADIRAR 599
Query: 359 LQELYGSVHNIDVWVGGILEDQVEGGKVGPLFRCLLMEQFVRLRDGD 499
L++LY N+D+W+ G+LED GG+VG +F C+L+EQF RLRDGD
Sbjct: 600 LEKLYKDPSNVDLWLAGLLEDLEPGGQVGKVFSCILVEQFKRLRDGD 646
>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1565
Score = 181 bits (440), Expect = 6e-46
Identities = 96/234 (41%), Positives = 136/234 (58%), Gaps = 2/234 (0%)
Frame = +2
Query: 5 RYDENFETIPQGHLLLRNAFFSPWRLVDEGGVDPLLRGMFTTPAKLKTSKQNLNSELTEK 184
R + NF+ I L+ +AFF+ +LV G++P L G+ ++ + L + LT+
Sbjct: 1011 RLNANFDPIGPDVPLI-DAFFNN-KLVQSTGIEPFLLGLLANFSQ--DVDRELAAGLTKH 1066
Query: 185 LFYSAHAV-ALDLAAINIQRGRDHAIPPYTKWRQFCNMSEVNDFDDLSGEISDKEVRDKL 361
LF + DLAA+NIQRGRDH +P Y WR+ CN++ F++ EI D R L
Sbjct: 1067 LFQQPESQHGFDLAALNIQRGRDHGLPGYGVWRRECNLTHAEIFEETRDEIRDPVTRQIL 1126
Query: 362 QELY-GSVHNIDVWVGGILEDQVEGGKVGPLFRCLLMEQFVRLRDGDRFWYENPSVFKPD 538
+Y GSV D+WV G+ E+ V+G VGP F C+L QF RLRDGDRFWYEN VF +
Sbjct: 1127 DRVYNGSVEFADLWVSGLAENPVKGASVGPTFLCILRSQFRRLRDGDRFWYENNGVFGKE 1186
Query: 539 QLRQIKETSLARILCDNGDNIDTISENVFYLPEVQDGLVSCEDLPSMDLRFWAD 700
QL +IK+ SL+R++CDN I ++ + F P D V+C + +DL W D
Sbjct: 1187 QLEEIKKISLSRVMCDNLPGIVSVQRDAFRAPSSSDLRVACARISGIDLTKWKD 1240
>SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)
Length = 1263
Score = 148 bits (359), Expect = 4e-36
Identities = 76/176 (43%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Frame = +2
Query: 2 HRYDENFETIPQGHLLLRNAFFSPWRLVDEGGVDPLLRGMFTTPAKLKTSKQNLNSELTE 181
HR +EN+E QGHL LR+A+F+P R++ EGG++PL+RGM LK QN++++ T+
Sbjct: 1013 HRLNENWEMAEQGHLSLRDAYFNPGRVIQEGGIEPLIRGM------LKQFAQNVDTKFTD 1066
Query: 182 KL---FYSAHAVALDLAAINIQRGRDHAIPPYTKWRQFCNMSEVNDFDDLSGEISDKEVR 352
+ + + + LDL ++ IQRGRDH + Y R+ + F EI+ E
Sbjct: 1067 AVRNFLFGTNTMGLDLVSLGIQRGRDHGLADYNAVREAIGLPRRASF----AEITPDENT 1122
Query: 353 DKLQELYGSVHNIDVWVGGILEDQVEGGKVGPLFRCLLMEQFVRLRDGDRFWYENP 520
K E+Y SV ++D+WVGG+ E+ VEGG VG F ++ QF LRDGDRFWYENP
Sbjct: 1123 LKKFEVYPSVDDVDLWVGGLAEEHVEGGCVGETFARIIAMQFKVLRDGDRFWYENP 1178
>SB_26887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 134 bits (324), Expect = 7e-32
Identities = 57/99 (57%), Positives = 74/99 (74%)
Frame = +2
Query: 197 AHAVALDLAAINIQRGRDHAIPPYTKWRQFCNMSEVNDFDDLSGEISDKEVRDKLQELYG 376
AHAVALDL A+NIQRGRDHA+P Y WR+ CN+S FDDL EIS ++R +L++LY
Sbjct: 2 AHAVALDLGALNIQRGRDHALPGYNSWRKLCNLSVAESFDDLKNEISSADIRARLEKLYK 61
Query: 377 SVHNIDVWVGGILEDQVEGGKVGPLFRCLLMEQFVRLRD 493
N+D+W+ G+LED GG+VG +F C+L+EQF RLRD
Sbjct: 62 DPSNVDLWLAGLLEDLEPGGQVGKVFSCILVEQFKRLRD 100
>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
Length = 623
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -2
Query: 431 LQPDLLKFLLPKHLYCELIRKAPVICPLLLYRLFHQTNRQSR*LHSYYKTDAT 273
LQP LL YC I ++ P+LLY+ + + LH YY T T
Sbjct: 363 LQPVLLHQYYCNQYYCTSITAPVLLQPVLLYQYYCTSITVPVLLHQYYCTSIT 415
>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
Length = 1710
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 401 VGGILEDQVEGGKVGPLFRCLLMEQFVRLRDGDRFWYENPSV 526
VG ILE+ V LFR LL F R+G R W + ++
Sbjct: 512 VGVILEEHRVTDTVFSLFRMLLHHAFQEEREGWRIWVDTLAI 553
>SB_6982| Best HMM Match : Plasmodium_HRP (HMM E-Value=5.5)
Length = 389
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 594 IILIQLAKTYFTYRKYKMGLYLVKICHQWIF 686
++ I + T ++ Y++GL L K+ HQW F
Sbjct: 219 VLEIIIKTTLLSFEIYEIGLLLNKLIHQWRF 249
>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2557
Score = 28.3 bits (60), Expect = 6.4
Identities = 25/100 (25%), Positives = 41/100 (41%)
Frame = +2
Query: 83 VDEGGVDPLLRGMFTTPAKLKTSKQNLNSELTEKLFYSAHAVALDLAAINIQRGRDHAIP 262
+ +GGV L + K T++Q SEL +++ A +A A Q R I
Sbjct: 2034 IHQGGVAGLQEAILNEVEKKHTTEQQALSELLQEIQEDADGIA--AAQYLSQDERQARIE 2091
Query: 263 PYTKWRQFCNMSEVNDFDDLSGEISDKEVRDKLQELYGSV 382
K RQ M V D + E E ++ + L+ ++
Sbjct: 2092 QLAKERQNWRMDSVRDSLQATAEQHQTEPHEEKKLLHNAL 2131
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 311 FDDLSGEISDKEVRDKLQELYGSVHNIDVW 400
FD+ + EI+ E D L E+Y ++ D+W
Sbjct: 2219 FDEDATEINPNETLDSLAEMYSLLNEEDMW 2248
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,521,635
Number of Sequences: 59808
Number of extensions: 433973
Number of successful extensions: 1110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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