Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0361
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase, ...    52   4e-07
At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ...    45   4e-05
At1g69870.1 68414.m08041 proton-dependent oligopeptide transport...    29   3.9  
At5g48800.1 68418.m06038 phototropic-responsive NPH3 family prot...    28   5.2  
At1g60570.1 68414.m06819 kelch repeat-containing F-box family pr...    28   5.2  
At3g08960.1 68416.m01047 importin beta-2 subunit family protein ...    28   6.9  
At5g05480.1 68418.m00590 expressed protein                             27   9.1  
At2g46450.1 68415.m05780 cyclic nucleotide-regulated ion channel...    27   9.1  
At1g46408.1 68414.m05212 MADS-box family protein contains simila...    27   9.1  

>At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 639

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
 Frame = +2

Query: 212 LDLAAINIQRGRDHAIPPYTKWRQFCNMSEVNDFDDLSGEISDKEVRDKLQELY-GSVHN 388
           +DLAA+ I R R+ ++P Y ++R+   M  +  ++DL+    D+E  + L ++Y G V  
Sbjct: 477 VDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLT---EDEEAIEVLDDVYDGDVEE 533

Query: 389 IDVWVGGILEDQVEGGKVGPLFRCLLMEQFVRLRDGDRFWYE--NPSVFKPDQLRQIKET 562
           +D+ VG + E +++G  +      + +    R  + DRF+    N +++    L  +  T
Sbjct: 534 LDLLVGLMAEKKIKGFAISETAFYIFLIMATRRLEADRFFTSDFNETIYTKKGLEWVNTT 593

Query: 563 SLARILCD 586
              + + D
Sbjct: 594 ESLKDVID 601


>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 631

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
 Frame = +2

Query: 212 LDLAAINIQRGRDHAIPPYTKWRQFCNMSEVNDFDDLSGEISDKEVRDKLQELY-GSVHN 388
           +D+AA+ I R R+  +P Y ++R+   MS ++ +++L+    D+E    L+E+Y   +  
Sbjct: 469 IDMAALEIYRDRERGVPRYNEFRKNLLMSPISKWEELT---DDEEAIKVLREVYEDDIEK 525

Query: 389 IDVWVGGILEDQVEGGKVGPLFRCLLMEQFVRLRDGDRFWYEN 517
           +D+ VG   E +++G  +      + +    R  + DRF+  N
Sbjct: 526 LDLNVGLHAEKKIKGFAISETAFFIFLLVASRRLEADRFFTTN 568


>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 620

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 161 LNSELTEKLFYSAHAVALDLAAINIQRGRDHAIPPYTKWRQFCNMSEVND 310
           + S +  KL  S     LD AA+ I+       PP  KWR  C++ EV +
Sbjct: 309 IKSSVLSKLHRSNQFRCLDKAAVVIEGDLTPEGPPADKWR-LCSVQEVEE 357


>At5g48800.1 68418.m06038 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 614

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 124 YNASKIENI*TKS*FRTDGKAILQRTCCSS 213
           +++S+  +  +K  FRTD K +++RTC S+
Sbjct: 584 HSSSRGSSSPSKQSFRTDSKVLMERTCAST 613


>At1g60570.1 68414.m06819 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 381

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -1

Query: 612 LIVSILSPLSHKIRARLVSFICRS*SGLNTLGFSYQNRSPSRKRTNC 472
           LI+SIL+ +S ++  R +S +C+    L T G  Y+ RS S    NC
Sbjct: 29  LILSILARVS-RLSYRSLSLVCKRFHSLLTSGEIYRFRSLSGYTENC 74


>At3g08960.1 68416.m01047 importin beta-2 subunit family protein low
           similarity to Lph2p [Saccharomyces cerevisiae]
           GI:1163089; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 754

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 401 VGGILEDQVEGGKVGPLFRCLLMEQFVRLRDGDRFWYENPSVFKPDQ 541
           VGGI+   +   ++  L   L+   FV        WY+NP  F  +Q
Sbjct: 309 VGGIVSSLLPNERIVLLCNVLVRRYFVLTASDLEEWYQNPESFHHEQ 355


>At5g05480.1 68418.m00590 expressed protein
          Length = 608

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 455 RCLLMEQFVRLRDGDRFWYENP 520
           R +++E +V     D FWY NP
Sbjct: 251 RQIVLELYVSFHGNDEFWYSNP 272


>At2g46450.1 68415.m05780 cyclic nucleotide-regulated ion channel,
           putative (CNGC12) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc3) GI:4581201 from
           [Arabidopsis thaliana]
          Length = 636

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 341 KEVRDKLQELYGSVHNIDVWVGGILEDQVEGGKVGPLFRCLLMEQFVRLRDGDRFWY 511
           K VR +L+++YG +  ++ W   +L   V    + PLF       F+ L D  RF +
Sbjct: 8   KSVRGRLKKVYGKMKTLENWRKTVLLACVVALAIDPLF------LFIPLIDSQRFCF 58


>At1g46408.1 68414.m05212 MADS-box family protein contains
           similarity to MADS-box protein GI:2505875 from
           [Arabidopsis thaliana]
          Length = 266

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +2

Query: 497 DRFWYENPSVFKPDQLRQIKET--SLARILCD 586
           +RFW+E+ S+ K + L +++E   S++ +L D
Sbjct: 84  ERFWWEDESLLKSENLEELREAMDSMSTMLRD 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,048,907
Number of Sequences: 28952
Number of extensions: 305864
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)