Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0360
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   146   2e-37
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   2.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  146 bits (354), Expect = 2e-37
 Identities = 75/182 (41%), Positives = 107/182 (58%), Gaps = 4/182 (2%)
 Frame = +2

Query: 176 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 355
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +SG++L+  AQT
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQT 204

Query: 356 GSGKTLAYILPAIVHI--NNQPPI--RRCDGPIALVLAPTRELAQQIQQVAADFGHTSYV 523
           GSGKT A++LP I ++  +  PP     C  P+ ++++PTRELA QI      F + S V
Sbjct: 205 GSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTV 264

Query: 524 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 703
           +   ++GG     Q   +  G  I++ATPGRL DF+ +G  +     Y VLDEADRMLDM
Sbjct: 265 KVAVIYGGTSTNHQRGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDM 324

Query: 704 GF 709
           GF
Sbjct: 325 GF 326


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +1

Query: 373 GLHLASNCAHK*PTAYSEM*WSDCFGLGAYQRVSTTNSASCCRF-WTHILCS*HVCVW 543
           G  LA N  +     YS   W+D  G G ++           +F +T+ LC   VC++
Sbjct: 113 GRFLAPNLTYLLVALYSGYVWTDILGFGYFREYLAEAVQLYFQFYYTYFLCV-IVCIF 169


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 413 VGYLCAQLLARCRPTFCRN 357
           +GY+C   +  CRP  C N
Sbjct: 253 LGYICEINVDDCRPGACHN 271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,586
Number of Sequences: 336
Number of extensions: 4392
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)