Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0360
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 291 5e-80
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 200 1e-52
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 172 4e-44
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 151 1e-37
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 147 1e-36
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 125 7e-30
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 118 8e-28
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 115 6e-27
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 111 7e-26
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 110 2e-25
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 104 1e-23
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 102 5e-23
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 101 8e-23
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 100 2e-22
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 100 2e-22
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 100 4e-22
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 95 9e-21
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 93 5e-20
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 89 4e-19
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 89 6e-19
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 85 1e-17
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 71 2e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 68 2e-12
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 38 0.001
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 38 0.001
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 33 0.031
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.29
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 30 0.38
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.1
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 2.7
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.7
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.7
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 6.3
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 26 6.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 291 bits (715), Expect = 5e-80
Identities = 137/223 (61%), Positives = 166/223 (74%)
Frame = +2
Query: 53 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 232
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 233 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 412
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 413 PPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 592
P + DGPI LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL RGVE
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVE 247
Query: 593 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
I IATPGRL+D L+ TNL+R TYLVLDEADRMLDMGFEPQI
Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQI 290
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 200 bits (489), Expect = 1e-52
Identities = 96/222 (43%), Positives = 140/222 (63%), Gaps = 4/222 (1%)
Frame = +2
Query: 68 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 244
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 245 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 424
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 425 RCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 604
+GPIA+++ PTRELA QI + F +R C +GGAP ++Q DL+RG EIV+
Sbjct: 488 TGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVC 547
Query: 605 TPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQI 721
TPGR+ID L TNL RCTYLVLDEADRM D+GFEPQ+
Sbjct: 548 TPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQV 589
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 172 bits (419), Expect = 4e-44
Identities = 84/189 (44%), Positives = 122/189 (64%), Gaps = 3/189 (1%)
Frame = +2
Query: 164 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 343
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 344 VAQTGSGKTLAYILPAIVHINNQPPIRRCD---GPIALVLAPTRELAQQIQQVAADFGHT 514
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
Query: 515 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRM 694
R V GG EQ+ + +G IV+ATPGRL+D LE+ L +CTY+V+DEADRM
Sbjct: 352 LGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRM 411
Query: 695 LDMGFEPQI 721
LDMGFE +
Sbjct: 412 LDMGFEDDV 420
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 151 bits (365), Expect = 1e-37
Identities = 81/194 (41%), Positives = 117/194 (60%), Gaps = 13/194 (6%)
Frame = +2
Query: 179 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 358
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 359 SGKTLAYILPAI-VHINNQP---PIRRCDG---------PIALVLAPTRELAQQIQQVAA 499
SGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 500 DFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 679
F + S+VR V+GGA R Q R +++G +++ ATPGRL+D +++G +L +LVLD
Sbjct: 277 KFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLD 336
Query: 680 EADRMLDMGFEPQI 721
EADRMLDMGFEPQI
Sbjct: 337 EADRMLDMGFEPQI 350
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 147 bits (357), Expect = 1e-36
Identities = 78/192 (40%), Positives = 118/192 (61%), Gaps = 3/192 (1%)
Frame = +2
Query: 155 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 325
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 326 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADF 505
G+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q +
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSV--PRVLVVSPTRELAIQTYENLNSL 259
Query: 506 GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 685
+ ++ V+GGAPK EQAR + ++I TPGRL+D + G+ + + YLVLDEA
Sbjct: 260 IQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEA 318
Query: 686 DRMLDMGFEPQI 721
DRMLD GFE I
Sbjct: 319 DRMLDTGFEQDI 330
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 125 bits (301), Expect = 7e-30
Identities = 71/170 (41%), Positives = 103/170 (60%), Gaps = 3/170 (1%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 401 I-NNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 577
+ NN P A+VLAPTRELA QI + G + VR+ + GG QA L
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVAL 161
Query: 578 ERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
+ +++ TPGRL+D LE KG +L+ YL++DEADR+LDM F P I
Sbjct: 162 SKKPHVLVCTPGRLMDHLENTKG-FSLKNLKYLIMDEADRLLDMDFGPII 210
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 118 bits (284), Expect = 8e-28
Identities = 68/193 (35%), Positives = 116/193 (60%), Gaps = 2/193 (1%)
Frame = +2
Query: 149 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 328
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 329 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFG 508
++++G A+TGSGKTLA+++P I + + +G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI-EMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELL 185
Query: 509 HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDE 682
+ V GGA +R +A L +GV +++ATPGRL+D L+ KG + LV+DE
Sbjct: 186 KYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVIDE 244
Query: 683 ADRMLDMGFEPQI 721
ADR+L++GFE ++
Sbjct: 245 ADRILEIGFEDEM 257
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 115 bits (277), Expect = 6e-27
Identities = 60/167 (35%), Positives = 93/167 (55%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
+ + AL+L+P RELA Q +V DF + +R+ + GG EQ L
Sbjct: 131 LKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLS 187
Query: 581 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
+IV+ATPGR + + L Y+V DEADR+ +MGF Q+
Sbjct: 188 GKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQL 234
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 111 bits (268), Expect = 7e-26
Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 1/168 (0%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
+ +P ++ L+L PTRELA Q VA + + GG + Q ++L
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 581 RGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQI 721
+ +IVIATPGR ID + ++ +V+DEADRML+ GF ++
Sbjct: 379 KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADEL 426
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 110 bits (265), Expect = 2e-25
Identities = 58/167 (34%), Positives = 91/167 (54%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
++ + + L+L PTRELA Q QV G V+ GG R+ L
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLN 160
Query: 581 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
V IV+ TPGR++D KG + CT V+DEAD++L F P I
Sbjct: 161 DTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPII 207
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 104 bits (249), Expect = 1e-23
Identities = 57/170 (33%), Positives = 91/170 (53%)
Frame = +2
Query: 212 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 391
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 392 IVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 571
+ I+ +++C AL+LAPTRELAQQIQ+V G V GG R+
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMA 132
Query: 572 DLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
L+ GV +V+ TPGR+ D +++ VLDEAD ML GF+ QI
Sbjct: 133 ALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQI 182
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 102 bits (245), Expect = 5e-23
Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 8/156 (5%)
Frame = +2
Query: 269 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPPI--RRCDG 436
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 437 PIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEIVIAT 607
A+++APTREL QQI VA + + ++ + V GG K+ + + +GV I+I T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 608 PGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFE 712
PGRL D LE ++ + ++VLDE DR++DMGFE
Sbjct: 277 PGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFE 312
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 101 bits (243), Expect = 8e-23
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 4/167 (2%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
+ P G AL+L PTRELA QI + A G +++ + GG Q+ DL
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLS 123
Query: 581 RGVEIVIATPGRLIDFL----EKGTTNLQRCTYLVLDEADRMLDMGF 709
+ +V+ATPGRL D + E+ L+R +LV+DEADR+L F
Sbjct: 124 KRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTF 170
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 100 bits (240), Expect = 2e-22
Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 1/186 (0%)
Frame = +2
Query: 155 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 334
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 335 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHT 514
++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRK-KWTSLDGLGALVISPTRELAIQTFETLVKIGRL 137
Query: 515 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADR 691
+ GG +E+ L R + I++ TPGRL+ +++ + L+LDEADR
Sbjct: 138 HSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADR 196
Query: 692 MLDMGF 709
+LDMGF
Sbjct: 197 ILDMGF 202
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 100 bits (239), Expect = 2e-22
Identities = 60/189 (31%), Positives = 97/189 (51%)
Frame = +2
Query: 155 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 334
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 335 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHT 514
++ AQ+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDH 115
Query: 515 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRM 694
V+ GG + L+ G +V TPGR+ D + + + L+LDEAD +
Sbjct: 116 MNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADEL 175
Query: 695 LDMGFEPQI 721
L+ GF+ QI
Sbjct: 176 LNQGFKEQI 184
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 99.5 bits (237), Expect = 4e-22
Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 3/176 (1%)
Frame = +2
Query: 191 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 370
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 371 LAYILPAIVHINNQPPI-RRCDGPIALVLAPTRELAQQIQQVAADFGH--TSYVRNTCVF 541
AY++P + + Q I G AL+L PTRELAQQ+ V + ++R V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVA 125
Query: 542 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 709
+ Q L +IVIATP R + + G L + +LV+DEAD ML G+
Sbjct: 126 TNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGY 181
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 95.1 bits (226), Expect = 9e-21
Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 10/174 (5%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADF---------GHTSYVRNTCVFG-GA 550
+ + G AL++APTRELA QI V + G V + + G G
Sbjct: 63 VTRRDTDE--TGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 551 PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 712
+ A E+ +VI TPGRL + L + + L+LDEAD ++DMGF+
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQ 172
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 92.7 bits (220), Expect = 5e-20
Identities = 59/146 (40%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Frame = +2
Query: 272 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPI--A 445
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 446 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 625
LV+APTRELA QI Q + +R + GG ++Q R L + +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWS 255
Query: 626 FLEKG--TTNLQRCTYLVLDEADRML 697
+ + T N ++ LVLDEADR+L
Sbjct: 256 VINENNLTGNFKKIKCLVLDEADRLL 281
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 89.4 bits (212), Expect = 4e-19
Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 3/181 (1%)
Frame = +2
Query: 188 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 364
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 365 KTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 544
KTLA++L A + P +++L+PTRELA QI + A + + +R + G
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIG 148
Query: 545 GAPKREQARDLERG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDEADRMLDMGFEPQ 718
G K + + RG ++IATPGRL D L+ T +LDEADR++DMGF
Sbjct: 149 GNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAES 208
Query: 719 I 721
I
Sbjct: 209 I 209
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 89.0 bits (211), Expect = 6e-19
Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Frame = +2
Query: 212 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 385
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 386 PAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 565
+ ++ P P A+ LAP+RELA+QI V + G + V+ FG K
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FG--IKDSV 223
Query: 566 ARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 700
+ + +IVI TPG ++D +++ + + VLDEAD MLD
Sbjct: 224 PKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 268
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 85.0 bits (201), Expect = 1e-17
Identities = 64/219 (29%), Positives = 112/219 (51%), Gaps = 4/219 (1%)
Frame = +2
Query: 74 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 247
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 248 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 424
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 425 RCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK-REQARDLERGVEIVI 601
G A+++APTREL +QI + A + ++ + K +E+A L ++ I
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCI 171
Query: 602 ATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQ 718
TP RL+ ++ G + ++ + V+DEADR+ + GF Q
Sbjct: 172 GTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPGFIEQ 209
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 70.9 bits (166), Expect = 2e-13
Identities = 44/141 (31%), Positives = 78/141 (55%), Gaps = 7/141 (4%)
Frame = +2
Query: 311 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP-PIRRCDGPIALVLAPTRELAQQIQ 487
P+ G ++ A TGSGKTL+Y++P + ++++ P RC +V+ PTREL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRC-----VVIVPTRELTVQVA 222
Query: 488 QVAADFGHTSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATPGRLIDFLEKGTT-N 649
+ + + ++ G R + L E ++++++TPGRL+D + + +
Sbjct: 223 KTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFS 282
Query: 650 LQRCTYLVLDEADRMLDMGFE 712
LQ Y+V+DEADR+LD F+
Sbjct: 283 LQHLRYMVIDEADRLLDQSFQ 303
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 67.7 bits (158), Expect = 2e-12
Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Frame = +2
Query: 254 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCD 433
+ + G++ P+ +Q P ++ G +++ A++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 434 GPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEIV 598
G ++ LVL TRELA QI+ A F + VR +GG + E +D + IV
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIV 177
Query: 599 IATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 700
+ATPGRL + + + + VLDE D++L+
Sbjct: 178 VATPGRLNALVREKILKVNSVKHFVLDECDKLLE 211
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 332 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQI 484
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 332 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQI 484
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 33.5 bits (73), Expect = 0.031
Identities = 28/97 (28%), Positives = 44/97 (45%)
Frame = +2
Query: 380 ILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 559
I AI ++N C G + L TR +++ Q DF G P
Sbjct: 77 IRKAIAYVNKYAS--GCFGRVERRLVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPC- 133
Query: 560 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 670
R L++G+E VI TP RL+ ++ + NLQR +++
Sbjct: 134 --GRCLKKGLECVIETPPRLLMNKDEISLNLQRLSHM 168
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 320 MSGKNLVGVAQTGSGKTLAYILPAIV 397
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.9 bits (64), Expect = 0.38
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Frame = +2
Query: 329 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFG 508
+N++ TG GKT + A+V +N +R + +APT+ L Q Q+ A +
Sbjct: 87 ENVLVALPTGLGKTF---IAAVVMMNY---LRWFPKSYIVFMAPTKPLVTQ--QMEACYK 138
Query: 509 HTSYVRN-TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 685
T ++ T G + + TP +++ ++ G + R + LV+DEA
Sbjct: 139 ITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEA 198
Query: 686 DR 691
R
Sbjct: 199 HR 200
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 269 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 409
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 437 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 283 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 158
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 143 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 274
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 143 PYEVEEYRNKHEVTVS 190
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 118 WIIKVFVERLE*NRIPIWASHVLPSREF 35
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 6.3
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +2
Query: 494 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 661
A FG S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 662 TYLVLDE 682
TY V E
Sbjct: 275 TYQVSGE 281
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 272 PLSLHLVAHNQENL--LLQSIE 213
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,189
Number of Sequences: 5004
Number of extensions: 72429
Number of successful extensions: 273
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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