Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0360
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 222 3e-58
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 206 1e-53
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 8e-39
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 3e-34
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 135 3e-32
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 118 5e-27
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 8e-27
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 116 2e-26
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 114 6e-26
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 3e-25
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 1e-24
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 4e-24
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 107 1e-23
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 1e-21
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 100 1e-21
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 100 1e-21
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 96 2e-20
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 94 9e-20
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 85 4e-17
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 81 1e-15
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 81 1e-15
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 5e-15
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 75 8e-14
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 8e-14
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 71 1e-12
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 71 1e-12
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 60 1e-09
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 58 5e-09
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 51 8e-07
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 3e-06
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 39 0.005
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 38 0.008
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 38 0.008
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 37 0.014
SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 33 0.31
SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 32 0.41
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 31 0.72
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.7
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 29 2.9
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 29 3.8
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.8
SB_47096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_27105| Best HMM Match : GDC-P (HMM E-Value=0) 28 8.8
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 222 bits (542), Expect = 3e-58
Identities = 103/215 (47%), Positives = 140/215 (65%)
Frame = +2
Query: 65 PDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 244
P+ + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 245 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 424
+ ++ + Y +PT IQ Q PIA+SG++++G+A+TGSGKT A++ PA+VHI +QP ++
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQ 586
Query: 425 RCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 604
DGPI L+ APTREL QQI A FG + VFGG K EQ++ L+ G EIV+A
Sbjct: 587 VGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSKALQEGAEIVVA 646
Query: 605 TPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 709
TPGRLID ++ TNL R TYLV DEADRM DMGF
Sbjct: 647 TPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGF 681
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 206 bits (504), Expect = 1e-53
Identities = 109/195 (55%), Positives = 130/195 (66%)
Frame = +2
Query: 137 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 316
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ---- 112
Query: 317 AMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVA 496
+ILP IVHIN+QP ++ DGPI LVL PTRELAQQ+Q+VA
Sbjct: 113 --------------------FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVA 152
Query: 497 ADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVL 676
G +R+TC++GGAPK Q R+LERGVEI IATPGRLID LE TNL+RCTYLVL
Sbjct: 153 YSVGKHCKLRSTCIYGGAPKGPQIRELERGVEICIATPGRLIDMLESRKTNLRRCTYLVL 212
Query: 677 DEADRMLDMGFEPQI 721
DEADRMLDMGFEPQI
Sbjct: 213 DEADRMLDMGFEPQI 227
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 157 bits (381), Expect = 8e-39
Identities = 83/193 (43%), Positives = 114/193 (59%), Gaps = 4/193 (2%)
Frame = +2
Query: 155 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 334
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 335 LVGVAQTGSGKTLAYILPAIVHINN----QPPIRRCDGPIALVLAPTRELAQQIQQVAAD 502
++ AQTGSGKT A++LP + + N P A+ +APTRELA QI A
Sbjct: 751 VMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARK 810
Query: 503 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 682
F H + +R +GG Q R L+ G +++ TPGRL DF+EKG +L+ +L+LDE
Sbjct: 811 FAHGTMLRPVVCYGGVSVSHQLRQLQSGCNLLVGTPGRLTDFIEKGKVSLKGLQFLILDE 870
Query: 683 ADRMLDMGFEPQI 721
ADRMLDMGFEP I
Sbjct: 871 ADRMLDMGFEPAI 883
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 142 bits (344), Expect = 3e-34
Identities = 75/179 (41%), Positives = 101/179 (56%)
Frame = +2
Query: 185 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSG 364
VSG I F E F + + + GY+ PTP+Q PI M+G++L+ AQTGSG
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 365 KTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 544
KT AY+LP + + Q P+AL +APTRELA+QI A F + ++ +G
Sbjct: 529 KTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHTPIKVCVCYG 588
Query: 545 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
G QA LERG ++ TPGRL DF+ + L +L+LDEADRMLD+GF P I
Sbjct: 589 GVSVPYQASQLERGCHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGFGPDI 647
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 135 bits (327), Expect = 3e-32
Identities = 84/231 (36%), Positives = 120/231 (51%), Gaps = 22/231 (9%)
Frame = +2
Query: 95 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 274
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 275 YKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVL 454
++ PTPIQ Q MSG++++G+A+TGSGKTLAY LP + + + P D P+AL+L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALIL 151
Query: 455 APTRELAQQI---------------------QQVAADFGH-TSYVRNTCVFGGAPKREQA 568
PTREL QQ+ Q V D T+ + V GG P Q
Sbjct: 152 TPTRELMQQVFMNVSEMLDVIRCPGNPGPSNQSVIYDTQQFTARYKAVAVCGGVPVSTQT 211
Query: 569 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
L G ++V+ATPGRL+D L + TYLV+DE DRML MG E Q+
Sbjct: 212 IALREGADVVVATPGRLLD--------LYKITYLVMDEPDRMLGMGMEEQL 254
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 118 bits (284), Expect = 5e-27
Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Frame = +2
Query: 161 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 340
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 341 GVAQTGSGKTLAYILPAIVHINNQPPIRRCD----GPIALVLAPTRELAQQIQQVAADFG 508
GVA+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++ FG
Sbjct: 143 GVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFG 202
Query: 509 HTSYVRNTCVFGGAPK 556
+R V GGA +
Sbjct: 203 RPLGIRTVSVIGGADR 218
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +2
Query: 545 GAPKREQARDLERGVEIVIATPGR-LIDFLEKGTTNLQRC----TYLVLDEADRMLDMGF 709
G PK E+ D ++G +I P R L +E+ R T V+ ADRM+DMGF
Sbjct: 165 GLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGADRMIDMGF 224
Query: 710 EPQI 721
EP++
Sbjct: 225 EPEV 228
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 117 bits (282), Expect = 8e-27
Identities = 68/170 (40%), Positives = 94/170 (55%)
Frame = +2
Query: 212 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 391
I FE+ + + + V GYK+PTP+Q PI ++L+ AQTGSGKT A+++P
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 933
Query: 392 IVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 571
+ I + P P AP DF + S R V+GGA Q R
Sbjct: 934 LSRIYMEGP------P-----APP------------DFSYRSLCRPCVVYGGADIGSQLR 970
Query: 572 DLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
+L+R +++ATPGRL+D +++G L +LVLDEADRMLDMGFEPQI
Sbjct: 971 ELDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQI 1020
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 116 bits (279), Expect = 2e-26
Identities = 71/174 (40%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Frame = +2
Query: 212 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 391
++ F + G+ G+ PT IQ QG P+A+SG++++G A+TGSGKTLA+++P
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 392 IVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAP-KREQA 568
I + Q DG ALV++PTRELA Q +V G+ + + GG K EQ
Sbjct: 109 IETLWRQ-KWTSMDGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQK 167
Query: 569 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCT---YLVLDEADRMLDMGFEPQI 721
R ++ IV+ TPGRL+ +++ T N CT LVLDEADR+LDMGF P +
Sbjct: 168 RIMK--TNIVVCTPGRLLQHMDE-TPNFD-CTSLQILVLDEADRILDMGFAPTL 217
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 114 bits (275), Expect = 6e-26
Identities = 55/145 (37%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +2
Query: 290 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN-QPPIRRCDGPIALVLAPTR 466
PIQA + G++++G A+TG+GKTL++ LP + + + + +R P LV+APTR
Sbjct: 98 PIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTR 157
Query: 467 ELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT 646
ELA+Q+ + S + C++GG P Q + G+++++ TPGR++DF+ +GT
Sbjct: 158 ELAKQVGNEFENL--KSNLEVYCIYGGMPYEPQENAINSGLDVLVGTPGRILDFMRQGTL 215
Query: 647 NLQRCTYLVLDEADRMLDMGFEPQI 721
+L + ++VLDE DRMLDMGF +
Sbjct: 216 DLSKLKHVVLDEVDRMLDMGFAESV 240
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 112 bits (269), Expect = 3e-25
Identities = 60/122 (49%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Frame = +2
Query: 365 KTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 544
K +Y P + P I IA+V+ PTRELA QI + F + +R CV+G
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYG 180
Query: 545 GAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEP 715
G EQ +L+RG EI++ TPGR+ID L TN QRCTYLVLDEADRM DMGFEP
Sbjct: 181 GTGISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEP 240
Query: 716 QI 721
QI
Sbjct: 241 QI 242
Score = 65.7 bits (153), Expect = 4e-11
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Frame = +2
Query: 50 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFE 226
+ ++ D +V QPF K+FY P + K +P E +E+R E + V G P++ +
Sbjct: 49 EELQPVDHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWA 108
Query: 227 EANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 355
+ + +K Y++PTPIQAQ P+ MSG++++ + T
Sbjct: 109 QTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMT 151
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 110 bits (265), Expect = 1e-24
Identities = 59/157 (37%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Frame = +2
Query: 254 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCD 433
QG+K MG+ T IQ + + G++L+G A+TGSGKTLA+++P +V + + + +
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRN 643
Query: 434 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 613
G ++++PTREL+ Q VA D + GG ++ +A L++GV ++IATPG
Sbjct: 644 GTGVIIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEAERLQKGVNLLIATPG 703
Query: 614 RLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFEPQI 721
RL+D L+ L + LV+DEADR+L++GFE ++
Sbjct: 704 RLLDHLQNTQGFLYKNLQCLVIDEADRILEIGFEEEM 740
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 108 bits (260), Expect = 4e-24
Identities = 57/135 (42%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Frame = +2
Query: 320 MSGKNLVGVAQTGSGKTLAYILPAIVHIN-NQPPIRRCDGPIALVLAPTRELAQQIQQVA 496
+S ++++ AQ+G+GKT + + + I+ N CD ALVLAPTRELAQQIQ+V
Sbjct: 120 LSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVV 179
Query: 497 ADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVL 676
G +V+ GG RE LE GV +V+ TPGR+ D + +G N + VL
Sbjct: 180 LALGDYMHVKCHACIGGTNVREDRMKLEEGVHVVVGTPGRVFDMINRGVLNTRDIKLFVL 239
Query: 677 DEADRMLDMGFEPQI 721
DEAD ML GF+ QI
Sbjct: 240 DEADEMLSRGFKDQI 254
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 107 bits (256), Expect = 1e-23
Identities = 62/148 (41%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Frame = +2
Query: 269 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIAL 448
MG K+PT IQ P + G++ +G A+TGSGKT A+ LP + + + P G A+
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDPY-----GIFAV 79
Query: 449 VLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDF 628
VL PTRELA QI G ++ + GG +QA L +VIATPGRL D
Sbjct: 80 VLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLANKPHVVIATPGRLADH 139
Query: 629 LEK-GTTNLQRCTYLVLDEADRMLDMGF 709
++ T NL++ +LVLDEADR+LD F
Sbjct: 140 IKSTDTLNLKKIQFLVLDEADRLLDPSF 167
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 100 bits (240), Expect = 1e-21
Identities = 58/153 (37%), Positives = 86/153 (56%)
Frame = +2
Query: 263 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPI 442
+T G+++P+ IQ + + G++++ AQ+G+GKT + + + I+ Q +R P
Sbjct: 13 ETEGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQ 67
Query: 443 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 622
ALVL+PTRELA QIQ+V G V+ GG E R L+ G IV TPGR+
Sbjct: 68 ALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGRVF 127
Query: 623 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
D + + + LVLDEAD ML+ GF+ QI
Sbjct: 128 DMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQI 160
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 100 bits (239), Expect = 1e-21
Identities = 54/174 (31%), Positives = 95/174 (54%), Gaps = 7/174 (4%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
FE+ + G+ G+ +P+PIQ + P+A++G++++ A+ G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
+ + C ALVL PTRELA Q Q+ + G + GG ++ L
Sbjct: 109 TDTT---KNCIQ--ALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLY 163
Query: 581 RG-------VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
V +++ATPGR++D ++K ++ +C LV+DEAD++L M F+ +
Sbjct: 164 NKDIFVHVVVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKML 217
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 100 bits (239), Expect = 1e-21
Identities = 54/174 (31%), Positives = 95/174 (54%), Gaps = 7/174 (4%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
FE+ + G+ G+ +P+PIQ + P+A++G++++ A+ G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
+ + C ALVL PTRELA Q Q+ + G + GG ++ L
Sbjct: 109 TDTT---KNCIQ--ALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLY 163
Query: 581 RG-------VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
V +++ATPGR++D ++K ++ +C LV+DEAD++L M F+ +
Sbjct: 164 NKDIFVHVVVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKML 217
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 96.3 bits (229), Expect = 2e-20
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Frame = +2
Query: 242 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP- 418
D V + + + +PT IQ P + +++ AQTGSGKTLAY+ P + +
Sbjct: 387 DDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPLVHRLREDEER 446
Query: 419 ---IRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 589
+ R P A ++ P RELA QI + A H + R+ + GG ++ DLE V
Sbjct: 447 HGILARLKRPRACIVVPARELATQILKTAKSLCHHARFRSVGLIGGRKQKWMRDDLESPV 506
Query: 590 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 712
++++ATPG L+ + +K T+LV+DEAD M D F+
Sbjct: 507 DLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMFDASFK 547
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 94.3 bits (224), Expect = 9e-20
Identities = 59/132 (44%), Positives = 81/132 (61%), Gaps = 2/132 (1%)
Frame = +2
Query: 329 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFG 508
K+++G+A+TGSGKT A+ LP + + + P +R AL+L PTRELA QI + G
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP--QRL---FALILTPTRELAFQISEQCEALG 56
Query: 509 HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDE 682
V+ + GG QA L + I+IATPGRLID LE KG +L+ YLV+DE
Sbjct: 57 SGIGVKCAVIVGGIDMMSQALMLAKKPHIIIATPGRLIDHLENTKG-FSLRTLKYLVMDE 115
Query: 683 ADRMLDMGFEPQ 718
ADR+L+M FE +
Sbjct: 116 ADRILNMDFEKE 127
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 85.4 bits (202), Expect = 4e-17
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 4/179 (2%)
Frame = +2
Query: 176 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 355
EV + G P + F +Y + +G PT +Q WP + G+++ GVA
Sbjct: 178 EVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVAIE 233
Query: 356 GSGKTLAYILPAIVHINNQPPIRR---CDGPIALVLAPTRELAQQIQQVAAD-FGHTSYV 523
GSGK LAY+LP I I + +GP+ L+L + ++ V D +
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCEDLIRNRRRT 293
Query: 524 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 700
R +FGG + ++ L G E+++ATP + L++ T+L R ++V D+AD + +
Sbjct: 294 RVQMIFGGGAEEDRIVPLINGCEVLVATPPCFLRMLKRCYTSLDRLCHVVFDDADMLAE 352
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 80.6 bits (190), Expect = 1e-15
Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 9/185 (4%)
Frame = +2
Query: 170 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--N 334
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++ N
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVN 144
Query: 335 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFG-H 511
++ +Q+G+GKT A++L + ++ P P + L+PT ELA+Q +VA G H
Sbjct: 145 MIAQSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGKH 199
Query: 512 TSYVR-NTCVFGGA-PKREQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDE 682
+++ N V G P+ ++ D I+I TPG L+D++ K ++ + VLDE
Sbjct: 200 CPHIKINYAVRGNQFPRGQKCTD-----HIIIGTPGTLLDWIRKSKCFEPRKVSVFVLDE 254
Query: 683 ADRML 697
AD M+
Sbjct: 255 ADIMI 259
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 80.6 bits (190), Expect = 1e-15
Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 1/157 (0%)
Frame = +2
Query: 254 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCD 433
+G+ G+++P+PIQ + P+ G +L+ A++G+GKT + + A+ ++ I +
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENV-----ITESN 80
Query: 434 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC-VFGGAPKREQARDLERGVEIVIATP 610
++L PTRE+A Q++ V G Y C VF G E+ + + I + TP
Sbjct: 81 CIQIIILTPTREIAVQVKDVICAIG-CHYDGLACKVFIGGISLEEDKKALKSCHIAVGTP 139
Query: 611 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
GR+ +E+ + +LDEAD++LD F+ QI
Sbjct: 140 GRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQQI 176
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 78.6 bits (185), Expect = 5e-15
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 15/152 (9%)
Frame = +2
Query: 239 PDYVQQGVKTMGYKEPTPIQAQGWPIAMS-GKNLVGVAQTGSGKTLAYILPAIVHINNQP 415
PD + + + G+ +PTPIQ+ P A+ ++++G A+TGSGKTLA+ +P I HI
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYK 197
Query: 416 PIRRCDGP--------------IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAP 553
+ P +AL++APTRELA Q++ + V+ + GG
Sbjct: 198 KRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMA 257
Query: 554 KREQARDLERGVEIVIATPGRLIDFLEKGTTN 649
+Q R L++ EIV+ATPGRL + + + T+
Sbjct: 258 APKQQRLLKQRPEIVVATPGRLWELISQVFTH 289
Score = 35.5 bits (78), Expect = 0.044
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 587 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 706
V +V+ + EK +N+Q YLV+DEADRM++ G
Sbjct: 316 VVVVVVVVDTSVTNQEKHVSNIQLLRYLVIDEADRMVEQG 355
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 74.5 bits (175), Expect = 8e-14
Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 3/180 (1%)
Frame = +2
Query: 170 KHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 349
K +V + V +H+ F + + + + G++ P+ +Q + P A+ G +++ A
Sbjct: 34 KKDVKGTYVSIHS--SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQA 91
Query: 350 QTGSGKTLAYILPAIVHINNQPPIRRCDGPIA-LVLAPTRELAQQIQQVAADF-GHTSYV 523
++G GKT ++L + + P+ DG ++ LV+ TRELA QI + F + S +
Sbjct: 92 KSGMGKTAVFVLATLQQLE---PV---DGQVSVLVMCHTRELAFQIHKEYERFCKYMSNI 145
Query: 524 RNTCVFGGAPKREQARDLERGV-EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 700
+ FGG ++ + L+ IV+ TPGR++ + T NL+ + +LDE D+ML+
Sbjct: 146 KIAVFFGGINIKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLE 205
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 74.5 bits (175), Expect = 8e-14
Identities = 50/180 (27%), Positives = 94/180 (52%), Gaps = 3/180 (1%)
Frame = +2
Query: 170 KHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 349
K +V + V +H+ F + + + + G++ P+ +Q + P A+ G +++ A
Sbjct: 34 KKDVKGTYVSIHS--SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQA 91
Query: 350 QTGSGKTLAYILPAIVHINNQPPIRRCDGPIA-LVLAPTRELAQQIQQVAADF-GHTSYV 523
++G GKT ++L + + P+ DG ++ LV+ TRELA QI + F + S +
Sbjct: 92 KSGMGKTAVFVLATLQQLE---PV---DGQVSVLVMCHTRELAFQIHKEYERFCKYMSNI 145
Query: 524 RNTCVFGGAPKREQARDLERGV-EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 700
+ FGG ++ + L+ IV+ TPGR++ + T NL+ + +LDE D+ML+
Sbjct: 146 KIAVFFGGINIKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLE 205
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 70.5 bits (165), Expect = 1e-12
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Frame = +2
Query: 239 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 418
P V++ +K MG +P PIQ + P S K+L+ ++TG+GK+L ++LP++ Q P
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP 222
Query: 419 IRRCDGPIALVLAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQ-ARDLERGVE 592
R G +++ PTRELA Q + +V+ G S V + ++E+ +D
Sbjct: 223 GR---GYGTIIVVPTRELASQMLYEVSRLLGDKSIVASFVSGVDLSRQEKLLKDSLHPPR 279
Query: 593 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 697
IVI TP RL + +++ QR +V+DE D+ L
Sbjct: 280 IVIGTPKRLWEIVQEHEHLFQRTKRIVIDEVDKTL 314
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/88 (36%), Positives = 52/88 (59%)
Frame = +2
Query: 110 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 289
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 290 PIQAQGWPIAMSGKNLVGVAQTGSGKTL 373
PIQ Q P+ +SG++++ A TGSGK L
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLL 248
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/48 (39%), Positives = 32/48 (66%)
Frame = +2
Query: 578 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
E GV++++ATPGR+++ + + +L V+DE D ML +GFE Q+
Sbjct: 253 EMGVQVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQV 300
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 70.5 bits (165), Expect = 1e-12
Identities = 43/127 (33%), Positives = 68/127 (53%)
Frame = +2
Query: 311 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQ 490
P+ M GK++V +A+TGSGKT A+++P + G AL+L+PTRELA Q Q+
Sbjct: 313 PLVMDGKDVVAMARTGSGKTAAFLIPMFEKLQTH---TAKVGIRALILSPTRELALQTQK 369
Query: 491 VAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 670
+ G + ++++ + GG + V+ATPGR + + + L Y+
Sbjct: 370 FIKELGRFTGLKSSVILGG--------------DSVVATPGRFLHVVMEMELKLSSVEYV 415
Query: 671 VLDEADR 691
V DEADR
Sbjct: 416 VFDEADR 422
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = +2
Query: 254 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCD 433
+ V +G+ PTPIQA P+A+ GK++ A TG+GKT A++LP + + +P +
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP--TQSP 80
Query: 434 GPIALVLAPTRELAQQ 481
LV+ PTRELA Q
Sbjct: 81 AIRVLVITPTRELAIQ 96
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 58.4 bits (135), Expect = 5e-09
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = +2
Query: 155 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 334
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173
Query: 335 LVGVAQTGSGKT 370
++ AQTGSGKT
Sbjct: 174 VMACAQTGSGKT 185
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 51.2 bits (117), Expect = 8e-07
Identities = 29/61 (47%), Positives = 34/61 (55%)
Frame = +2
Query: 437 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 616
P ALVL+PTRELA QIQ+V G V+ GG E R L+ G IV TPGR
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGR 63
Query: 617 L 619
+
Sbjct: 64 V 64
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +2
Query: 149 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 316
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 317 AMSGKNLVG 343
G G
Sbjct: 197 MAHGPKKSG 205
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 587 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 706
V+IV TPG+L DF+ +L + + +LDEAD +L G
Sbjct: 136 VDIVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQG 175
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 527 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG 640
+ C+ GG RE LE GV +V+ TPGR+ D + +G
Sbjct: 6 HACI-GGTNVREDRMKLEEGVHVVVGTPGRVFDMINRG 42
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2
Query: 647 NLQRCTYLVLDEADRMLDMGFEPQI 721
N+ YLVLDEADRM+DMGFE +
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDV 37
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2
Query: 647 NLQRCTYLVLDEADRMLDMGFEPQI 721
N+ YLVLDEADRM+DMGFE +
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDV 37
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 37.1 bits (82), Expect = 0.014
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 5/179 (2%)
Frame = +2
Query: 101 KNFYDPHPTVLKRSPYEVEEY-RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGY 277
K D + LK E +E+ +N TV+ + P+ E P V + + +G+
Sbjct: 467 KELPDENDENLKEFAPEDDEFLKNLSLDTVAQMAAGIPV----ETETPPEVYKALGQLGF 522
Query: 278 KEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLA 457
Q Q +SG + + V TG+GK+L Y LPA ++ P C + LV++
Sbjct: 523 SSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLPAYMYHKRSP----C---LTLVIS 575
Query: 458 PTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR---DLERG-VEIVIATPGRLI 622
P L + Q FG ++ C+ K ++ + D+ G V +++ +P L+
Sbjct: 576 PLVSLMED-QITGLPFG----LKGACLHNNQTKPQRLKILTDITAGKVAVLLVSPEALV 629
>SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 33.1 bits (72), Expect = 0.23
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 572 DLERGVEIVIATPGRLIDFL 631
+L+RG EI++ TPGR+ID L
Sbjct: 3 ELKRGAEIIVCTPGRMIDML 22
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 272 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 397
GY + P+Q Q ++ K+ + + TG+GKT+ Y +PA++
Sbjct: 136 GYIDFRPMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPALL 177
>SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 632 EKGTTNLQRCTYLVLDEADRMLDMG 706
E+ +N+Q YLV+DEADRM++ G
Sbjct: 2 EEHVSNVQLLRYLVIDEADRMVEQG 26
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 668 LVLDEADRMLDMGF 709
LVLDEADRMLDMGF
Sbjct: 7 LVLDEADRMLDMGF 20
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 31.5 bits (68), Expect = 0.72
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Frame = +2
Query: 323 SGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAAD 502
S +N+ A TGSGKT+ A++ Q P RC + + P + LA+Q+ +
Sbjct: 1985 SSENVFIGAPTGSGKTICAEF-AVLRFLQQSPEGRC-----VYVTPIQALAEQVYADWQN 2038
Query: 503 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR--LIDFLEKGTTNLQRCTYLVL 676
+N + G + + L +G +V++TP + ++ K N+Q + ++
Sbjct: 2039 KFGLQLGKNVVMLTGETSAD-LKLLAKG-NVVVSTPEKWDVLSRRWKQRKNVQNVSLFIM 2096
Query: 677 DEA 685
DEA
Sbjct: 2097 DEA 2099
Score = 31.1 bits (67), Expect = 0.95
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 7/163 (4%)
Frame = +2
Query: 233 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAI----V 397
+ P Y Q + GY IQ++ A+ S +NL+ A TG+GKT +L +
Sbjct: 1098 SLPMYAQAAFE--GYPTLNRIQSRLCETALNSDENLLLCAPTGAGKTNVALLTILREIGK 1155
Query: 398 HINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 577
HIN I + I + +AP R L +Q++ +F V ++
Sbjct: 1156 HINLDGTINTEEFKI-IYVAPMRSL---VQEMVLNFSKRLSTYGLTVSELTGDHNLTKEQ 1211
Query: 578 ERGVEIVIATPGR--LIDFLEKGTTNLQRCTYLVLDEADRMLD 700
G +I++ TP + +I T Q +++DE + D
Sbjct: 1212 IHGTQIIVCTPEKWDIITRKSGERTFTQLVRLIIIDEIHLLHD 1254
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 197 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 310
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 143 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 274
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 668 LVLDEADRMLDMGFEPQI 721
LVLDEAD ML+ GF+ QI
Sbjct: 39 LVLDEADEMLNKGFKEQI 56
>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1177
Score = 29.1 bits (62), Expect = 3.8
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Frame = +2
Query: 335 LVGVAQTGSGKTLAYILPAI-VHINNQPPIRRCDGPIALVLAPTREL-AQQIQQVAADFG 508
LV A TGSGKT+ + L I + + + IRR + +AP + L +++ AA FG
Sbjct: 353 LVVCAPTGSGKTVIFELAIIRLIMKSAEDIRRTK---IIYMAPMKALCSERCTDWAAKFG 409
Query: 509 HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT 646
++ V G + + R V IV+ TP L++ ++G T
Sbjct: 410 PLG-IKCKEVTGDSELDDYFE--IRDVNIVMTTPVHLLNDEDRGAT 452
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 320 MSGKNLVGVAQTGSGKTLAYILPAIV 397
MSG + + + TG GK+L + LPA+V
Sbjct: 102 MSGVDCILIMPTGGGKSLCFQLPAVV 127
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 155 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 247
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_47096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = -3
Query: 690 RSASSRTKYVHRCKLVVPFSKKSINLPGVAMTISTPLSKSRACSLLGAPPNTHVLRT*DV 511
+ S +T+ V C + K S+ + T LSKS+A G P + + V
Sbjct: 193 KEISKKTEQVRSCGIAAQMGKDSMGVIKNISTTGNDLSKSKAMRSKGGPDSKAPSKKATV 252
Query: 510 CPKSAAT 490
P +A +
Sbjct: 253 RPSTAGS 259
>SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)
Length = 767
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 420 IGGWLFMCTIAGKM*ANVLPEPVWATP-TKFFPDIAIGQ 307
IG + C + + N+L P W TP T + P++A G+
Sbjct: 49 IGMGYYSCHVPTTILRNILENPGWTTPYTPYQPELAQGR 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,792,327
Number of Sequences: 59808
Number of extensions: 560904
Number of successful extensions: 1324
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -