Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0360
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      150   1e-38
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.55 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  150 bits (363), Expect = 1e-38
 Identities = 80/187 (42%), Positives = 107/187 (57%), Gaps = 5/187 (2%)
 Frame = +2

Query: 176 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 355
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+  AQT
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 356 GSGKTLAYILPAIVHINNQP-----PIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSY 520
           GSGKT A+ +P I  +  +          C+ P  ++++PTREL  QI Q    F   S 
Sbjct: 243 GSGKTAAFAVPIINTLLERSVDLVVTSTYCE-PQVVIVSPTRELTIQIWQQIVKFSLNSI 301

Query: 521 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 700
           ++    +GG     Q   L  G  I++ATPGRL+DF+EKG        +LVLDEADRMLD
Sbjct: 302 LKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLD 361

Query: 701 MGFEPQI 721
           MGF P I
Sbjct: 362 MGFLPSI 368


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 283 TDAHSSSRLADSYVWKEFSWRSPNGF 360
           +D+ +  +L + Y WK   +  PNG+
Sbjct: 16  SDSQAQEKLKNIYSWKALEFAFPNGY 41


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 73  PIWASHVLPSREFFFP 26
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 457 RQDQSNRTITSPNRRLVIYVHNCW 386
           +Q QS +TIT     +VI    CW
Sbjct: 250 KQVQSRKTITRMLSAVVITFFICW 273


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 73  PIWASHVLPSREFFFP 26
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 134 KRSPYEVEEYRNKHEVTV 187
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 474 ANSLVGAKTKAIGPSHLRIG 415
           ANS VG+ + A+ P H+  G
Sbjct: 92  ANSPVGSPSAALQPQHVVYG 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,843
Number of Sequences: 438
Number of extensions: 4961
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)