Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0360
(722 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 293 1e-79
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 277 4e-75
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 277 4e-75
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 222 2e-58
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 222 2e-58
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 222 2e-58
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 222 2e-58
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 209 2e-54
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 208 4e-54
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 207 7e-54
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 180 9e-46
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 178 3e-45
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 167 5e-42
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 166 1e-41
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 161 6e-40
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 157 5e-39
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 156 1e-38
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 156 1e-38
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 156 2e-38
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 133 1e-31
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 123 1e-28
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 122 3e-28
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 118 3e-27
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 118 5e-27
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 117 7e-27
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 116 2e-26
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 115 4e-26
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 113 1e-25
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 111 3e-25
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 110 8e-25
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 110 8e-25
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 108 3e-24
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 108 4e-24
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 108 4e-24
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 107 6e-24
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 107 6e-24
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 107 7e-24
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 105 3e-23
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 104 5e-23
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 103 9e-23
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 103 2e-22
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 102 3e-22
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 100 8e-22
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 98 4e-21
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 98 6e-21
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 97 1e-20
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 97 1e-20
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 93 2e-19
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 92 3e-19
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 92 3e-19
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 89 4e-18
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 89 4e-18
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 88 6e-18
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 87 8e-18
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 85 3e-17
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 81 6e-16
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 81 7e-16
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 70 1e-12
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 67 1e-11
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 66 2e-11
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 66 2e-11
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 65 4e-11
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 59 3e-09
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 54 1e-07
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 37 0.012
At2g28600.1 68415.m03476 expressed protein 37 0.012
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 32 0.44
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 31 0.58
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 1.0
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 2.4
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.5
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.5
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 28 7.2
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 28 7.2
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 7.2
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 7.2
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 7.2
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 28 7.2
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 27 9.5
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 27 9.5
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi... 27 9.5
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 27 9.5
At1g13810.1 68414.m01621 expressed protein ; expression supporte... 27 9.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 293 bits (718), Expect = 1e-79
Identities = 135/224 (60%), Positives = 169/224 (75%)
Frame = +2
Query: 50 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEE 229
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 230 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN 409
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+TGSGKTL+Y+LPAIVH+N
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA 163
Query: 410 QPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 589
QP + DGPI LVLAPTRELA QIQQ A+ FG +S ++ TC++GG PK Q RDL++GV
Sbjct: 164 QPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGV 223
Query: 590 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
EIVIATPGRLID +E TNL+R TYLVLDEADRMLDMGF+PQI
Sbjct: 224 EIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQI 267
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 277 bits (680), Expect = 4e-75
Identities = 128/213 (60%), Positives = 165/213 (77%)
Frame = +2
Query: 83 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 262
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 263 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPI 442
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 443 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 622
L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLI
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI 300
Query: 623 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
D LE TNL+R TYLVLDEADRMLDMGFEPQI
Sbjct: 301 DMLECQHTNLKRVTYLVLDEADRMLDMGFEPQI 333
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 277 bits (680), Expect = 4e-75
Identities = 128/213 (60%), Positives = 165/213 (77%)
Frame = +2
Query: 83 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 262
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 263 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPI 442
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 443 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 622
L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLI
Sbjct: 241 VLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI 300
Query: 623 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
D LE TNL+R TYLVLDEADRMLDMGFEPQI
Sbjct: 301 DMLECQHTNLKRVTYLVLDEADRMLDMGFEPQI 333
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 222 bits (543), Expect = 2e-58
Identities = 108/202 (53%), Positives = 138/202 (68%)
Frame = +2
Query: 116 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 295
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 296 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELA 475
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELA 243
Query: 476 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQ 655
QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D LE +L+
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLR 303
Query: 656 RCTYLVLDEADRMLDMGFEPQI 721
+ +YLVLDEADRMLDMGFEPQI
Sbjct: 304 QISYLVLDEADRMLDMGFEPQI 325
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 222 bits (543), Expect = 2e-58
Identities = 108/202 (53%), Positives = 138/202 (68%)
Frame = +2
Query: 116 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 295
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 296 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELA 475
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELA 243
Query: 476 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQ 655
QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D LE +L+
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLR 303
Query: 656 RCTYLVLDEADRMLDMGFEPQI 721
+ +YLVLDEADRMLDMGFEPQI
Sbjct: 304 QISYLVLDEADRMLDMGFEPQI 325
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 222 bits (543), Expect = 2e-58
Identities = 108/202 (53%), Positives = 138/202 (68%)
Frame = +2
Query: 116 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 295
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 296 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELA 475
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELA 243
Query: 476 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQ 655
QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D LE +L+
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLR 303
Query: 656 RCTYLVLDEADRMLDMGFEPQI 721
+ +YLVLDEADRMLDMGFEPQI
Sbjct: 304 QISYLVLDEADRMLDMGFEPQI 325
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 222 bits (543), Expect = 2e-58
Identities = 100/218 (45%), Positives = 145/218 (66%)
Frame = +2
Query: 68 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 247
D S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 248 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 427
+ +K Y++PT IQ Q PI +SG++++G+A+TGSGKT A++LP IVHI +QP ++R
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR 298
Query: 428 CDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 607
+GPI ++ APTRELA QI A F +R + V+GG K EQ ++L+ G EIV+AT
Sbjct: 299 DEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVAT 358
Query: 608 PGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
PGRLID L+ + R +YLVLDEADRM D+GFEPQ+
Sbjct: 359 PGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQV 396
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 209 bits (510), Expect = 2e-54
Identities = 102/221 (46%), Positives = 140/221 (63%), Gaps = 3/221 (1%)
Frame = +2
Query: 68 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 247
D + +PF KNFY + + + EV YR + E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 248 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 427
+ +K + Y++P PIQ Q PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 599
Query: 428 CDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 607
DGPI LV+APTREL QQI F +R V+GG+ +Q +L+RG EIV+ T
Sbjct: 600 GDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 659
Query: 608 PGRLIDFL--EKG-TTNLQRCTYLVLDEADRMLDMGFEPQI 721
PGR+ID L G TNL+R T+LV+DEADRM DMGFEPQI
Sbjct: 660 PGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQI 700
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar to
RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 208 bits (507), Expect = 4e-54
Identities = 103/221 (46%), Positives = 139/221 (62%), Gaps = 3/221 (1%)
Frame = +2
Query: 68 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 247
D + +PF KNFY + + + V YR + E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 248 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 427
+ +K + Y++P PIQAQ PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 466
Query: 428 CDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 607
DGPI LV+APTREL QQI F + V+GG+ +Q +L+RG EIV+ T
Sbjct: 467 GDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCT 526
Query: 608 PGRLIDFL--EKG-TTNLQRCTYLVLDEADRMLDMGFEPQI 721
PGR+ID L G TNL+R TYLV+DEADRM DMGFEPQI
Sbjct: 527 PGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQI 567
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 207 bits (505), Expect = 7e-54
Identities = 105/212 (49%), Positives = 140/212 (66%), Gaps = 4/212 (1%)
Frame = +2
Query: 98 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 265
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 266 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIA 445
+ G+ PTPIQAQ WPIA+ +++V +A+TGSGKTL Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 446 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 625
L+LAPTRELA QIQ A FG +S + TC++GGAPK Q ++LERG +IV+ATPGRL D
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLND 570
Query: 626 FLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
LE + Q+ + LVLDEADRMLDMGFEPQI
Sbjct: 571 ILEMKMIDFQQVSLLVLDEADRMLDMGFEPQI 602
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 180 bits (438), Expect = 9e-46
Identities = 86/154 (55%), Positives = 111/154 (72%)
Frame = +2
Query: 260 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGP 439
V + G+ P+PIQAQ WPIAM +++V +A+TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GP 302
Query: 440 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 619
LVL+PTRELA QIQ A FG +S + C++GGAPK Q +++ERGV+IV+ATPGRL
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRL 362
Query: 620 IDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
D LE +L + +YLVLDEADRMLDMGFEPQI
Sbjct: 363 NDILEMKRISLHQVSYLVLDEADRMLDMGFEPQI 396
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 155 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 244
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 178 bits (433), Expect = 3e-45
Identities = 83/190 (43%), Positives = 123/190 (64%), Gaps = 3/190 (1%)
Frame = +2
Query: 161 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 340
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 341 GVAQTGSGKTLAYILPAIVHINNQPPI---RRCDGPIALVLAPTRELAQQIQQVAADFGH 511
G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Query: 512 TSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 691
R T + GG EQ + +G EIVIATPGRLID LE+ L +C Y+VLDEADR
Sbjct: 415 YLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADR 474
Query: 692 MLDMGFEPQI 721
M+DMGFEPQ+
Sbjct: 475 MIDMGFEPQV 484
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 167 bits (407), Expect = 5e-42
Identities = 95/231 (41%), Positives = 128/231 (55%), Gaps = 8/231 (3%)
Frame = +2
Query: 53 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 223
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 224 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 403
E + + + ++ Y +PTP+Q PI +G++L+ AQTGSGKT A+ P I I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 404 NNQPPIRRCDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 568
I R G P+A++L+PTRELA QI A F + + V+ +GG P +Q
Sbjct: 209 MKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQI 268
Query: 569 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
R+LERGV+I++ATPGRL D LE+G +LQ +L LDEADRMLDMGFEPQI
Sbjct: 269 RELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQI 319
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 166 bits (404), Expect = 1e-41
Identities = 89/231 (38%), Positives = 129/231 (55%), Gaps = 8/231 (3%)
Frame = +2
Query: 53 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYF 223
N R WD + PF + +P P ++ + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 224 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 403
E + + + ++ Y +PTP+Q PI + G++L+ AQTGSGKT A+ P I I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGI 221
Query: 404 NNQPPIRRCDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 568
++R G P+A++L+PTRELA QI A F + + V+ +GG P +Q
Sbjct: 222 MKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQL 281
Query: 569 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
R+LERGV+I++ATPGRL D LE+ ++Q +L LDEADRMLDMGFEPQI
Sbjct: 282 RELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQI 332
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 161 bits (390), Expect = 6e-40
Identities = 86/214 (40%), Positives = 128/214 (59%), Gaps = 9/214 (4%)
Frame = +2
Query: 107 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 286
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 287 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRCDGPIALVLA 457
TPIQ QG P+ +SG++++G+A TGSGKTL ++LP I+ + PI +GPIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 458 PTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEIVIATPGRL 619
P+RELA+Q ++Q A Y +R+ GG R Q +++GV IV+ATPGRL
Sbjct: 181 PSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRL 240
Query: 620 IDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
D L K +L C L LDEADR++D+GFE I
Sbjct: 241 KDILAKKKMSLDACRLLTLDEADRLVDLGFEDDI 274
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 157 bits (382), Expect = 5e-39
Identities = 84/213 (39%), Positives = 126/213 (59%), Gaps = 9/213 (4%)
Frame = +2
Query: 110 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 289
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 290 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRCDGPIALVLAP 460
PIQ QG P+ ++G++++G+A TGSGKTL ++LP I+ + PI +GPI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 461 TRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 622
+RELA+Q ++Q A Y +R+ GG R Q ++RGV IV+ATPGRL
Sbjct: 231 SRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLK 290
Query: 623 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
D L K +L C YL LDEADR++D+GFE I
Sbjct: 291 DMLAKKKMSLDACRYLTLDEADRLVDLGFEDDI 323
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 156 bits (379), Expect = 1e-38
Identities = 89/231 (38%), Positives = 127/231 (54%), Gaps = 8/231 (3%)
Frame = +2
Query: 53 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 223
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 224 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 403
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 404 NNQPPIRRCDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 568
+ R G P A++L+PTRELA QI A F + + V+ +GG P +Q
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQL 273
Query: 569 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
R+LERG +I++ATPGRL D LE+ ++Q +L LDEADRMLDMGFEPQI
Sbjct: 274 RELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQI 324
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 156 bits (379), Expect = 1e-38
Identities = 89/231 (38%), Positives = 127/231 (54%), Gaps = 8/231 (3%)
Frame = +2
Query: 53 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 223
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 224 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 403
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 404 NNQPPIRRCDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 568
+ R G P A++L+PTRELA QI A F + + V+ +GG P +Q
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQL 273
Query: 569 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
R+LERG +I++ATPGRL D LE+ ++Q +L LDEADRMLDMGFEPQI
Sbjct: 274 RELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQI 324
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 156 bits (378), Expect = 2e-38
Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 6/197 (3%)
Frame = +2
Query: 149 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 322
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 323 SGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPI---RRCDGPIALVLAPTRELAQQIQQ 490
G++L+G+A+TGSGKTLA+ +PAI+H+ I + P LVL+PTRELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 491 VAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 670
V + G +++ CV+GG+ K Q + GV+IVI TPGRL D +E L +++
Sbjct: 210 VLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFV 269
Query: 671 VLDEADRMLDMGFEPQI 721
VLDEADRMLDMGFE +
Sbjct: 270 VLDEADRMLDMGFEEPV 286
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 133 bits (322), Expect = 1e-31
Identities = 74/199 (37%), Positives = 108/199 (54%), Gaps = 5/199 (2%)
Frame = +2
Query: 140 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 313
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 314 IAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRCDGPIALVLAPTRELAQQI 484
A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 485 QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCT 664
+ A G + V GG P Q +++GVE++I TPGR++D L K T L
Sbjct: 203 EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIM 262
Query: 665 YLVLDEADRMLDMGFEPQI 721
VLDE D ML GF Q+
Sbjct: 263 TFVLDEVDCMLQRGFRDQV 281
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 123 bits (296), Expect = 1e-28
Identities = 72/181 (39%), Positives = 102/181 (56%), Gaps = 1/181 (0%)
Frame = +2
Query: 182 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 361
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 362 GKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 541
GKT A+ LP + + +P +R L+L PTRELA QI + + + ++ +
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIV 273
Query: 542 GGAPKREQARDLERGVEIVIATPGRLIDFLEKG-TTNLQRCTYLVLDEADRMLDMGFEPQ 718
GG REQ L +IV+ATPGR+ID L + +L L+LDEADR+L GF +
Sbjct: 274 GGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATE 333
Query: 719 I 721
I
Sbjct: 334 I 334
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 122 bits (293), Expect = 3e-28
Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 1/168 (0%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
FE N V +K GYK PTPIQ + P+ +SG ++V +A+TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
+ P G AL+L+PTR+LA+Q + + G + +R + + GG +Q +L
Sbjct: 90 LKQHVP---QGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELT 146
Query: 581 RGVEIVIATPGRLIDFL-EKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
+G +++IATPGRL+ L E L+ Y+V DEAD + MGF Q+
Sbjct: 147 KGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQL 194
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 118 bits (285), Expect = 3e-27
Identities = 62/160 (38%), Positives = 101/160 (63%), Gaps = 2/160 (1%)
Frame = +2
Query: 248 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIR 424
+ + + + G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 425 RCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVI 601
R P+ LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R L+ GV++ +
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAV 231
Query: 602 ATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
TPGR+ID +++G NL ++VLDEAD+ML +GF +
Sbjct: 232 GTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDV 271
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 118 bits (283), Expect = 5e-27
Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 4/174 (2%)
Frame = +2
Query: 212 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 391
++ F+E + V ++ + + PT IQ G P M K++V + TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 392 IVHIN----NQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 559
+ + N + P +VL PTREL++Q+ +VA H + R+ V GG+ R
Sbjct: 171 VQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIR 230
Query: 560 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
Q L +++V+ TPGR++ +E+G YLVLDEAD M D GF P+I
Sbjct: 231 PQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEI 284
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 117 bits (282), Expect = 7e-27
Identities = 62/160 (38%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Frame = +2
Query: 248 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN-QPPIR 424
+ + +K G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 425 RCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVI 601
R P LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L G+++ +
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAV 243
Query: 602 ATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
TPGR+ID +++G NL ++VLDEAD+ML +GF +
Sbjct: 244 GTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDV 283
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 116 bits (278), Expect = 2e-26
Identities = 72/195 (36%), Positives = 108/195 (55%), Gaps = 5/195 (2%)
Frame = +2
Query: 140 SPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 319
S E ++ K ++ V VEV NP + +++ +K G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 320 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP-IRRCDG----PIALVLAPTRELAQQI 484
+ G +LVG A+TG GKTLA++LP + + N P +R G P LVL PTRELA+Q+
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
Query: 485 QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCT 664
+G + + + C++GG Q L+RGV+IV+ TPGR+ D +E+ +
Sbjct: 191 AADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQ 250
Query: 665 YLVLDEADRMLDMGF 709
+ VLDEAD ML MGF
Sbjct: 251 FRVLDEADEMLRMGF 265
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 115 bits (276), Expect = 4e-26
Identities = 73/214 (34%), Positives = 115/214 (53%), Gaps = 3/214 (1%)
Frame = +2
Query: 89 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 268
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 269 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIAL 448
MG+ T IQA+ P M G++++G A+TGSGKTLA+++PA V + + +G L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVL 230
Query: 449 VLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 622
V+ PTRELA Q VA + H+ V V GG ++ +A L +GV +++ATPGRL+
Sbjct: 231 VICPTRELAIQSYGVAKELLKYHSQTVGK--VIGGEKRKTEAEILAKGVNLLVATPGRLL 288
Query: 623 DFLEKGTTNL-QRCTYLVLDEADRMLDMGFEPQI 721
D LE + + +LV+DEADR+L+ FE +
Sbjct: 289 DHLENTNGFIFKNLKFLVMDEADRILEQNFEEDL 322
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 113 bits (272), Expect = 1e-25
Identities = 57/154 (37%), Positives = 95/154 (61%), Gaps = 3/154 (1%)
Frame = +2
Query: 269 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRCDGPIA 445
MG++ PT +QAQ P+ +SG++++ A TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 446 LVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 622
LV+ PTREL Q+ + H ++ V GG K ++ L +G+ I+IATPGRL+
Sbjct: 108 LVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLL 167
Query: 623 DFLEKGTTNLQR-CTYLVLDEADRMLDMGFEPQI 721
D L+ + + + +++ DEAD +L++G+ +I
Sbjct: 168 DHLKNTASFVHKNLRWVIFDEADSILELGYGKEI 201
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 111 bits (268), Expect = 3e-25
Identities = 63/168 (37%), Positives = 96/168 (57%), Gaps = 5/168 (2%)
Frame = +2
Query: 233 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 412
+ P +++ ++ G PIQ A+ G++++ A+TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 413 P----PIRRCDG-PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 577
RR P LVLAPTRELA+Q+++ + Y+ CV+GG Q L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSAL 225
Query: 578 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
RGV++V+ TPGR+ID +E + L YLVLDEAD+ML +GFE +
Sbjct: 226 TRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAV 273
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 110 bits (265), Expect = 8e-25
Identities = 53/167 (31%), Positives = 96/167 (57%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
I+ + + A+++ PTRELA Q QV + G ++ GG ++ L
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLY 247
Query: 581 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
+ V +++ TPGR++D +KG L+ C+ LV+DEAD++L F+P +
Sbjct: 248 QPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSV 294
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 110 bits (265), Expect = 8e-25
Identities = 53/167 (31%), Positives = 96/167 (57%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
I+ + + A+++ PTRELA Q QV + G ++ GG ++ L
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLY 247
Query: 581 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
+ V +++ TPGR++D +KG L+ C+ LV+DEAD++L F+P +
Sbjct: 248 QPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSV 294
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 108 bits (260), Expect = 3e-24
Identities = 55/167 (32%), Positives = 96/167 (57%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
I+ + + + A++L PTRELA Q QV + + GG R+ L
Sbjct: 216 IDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLY 270
Query: 581 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
+ V +++ TPGR++D +KG L+ C LV+DEAD++L + F+P I
Sbjct: 271 QPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSI 317
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 108 bits (259), Expect = 4e-24
Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Frame = +2
Query: 197 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 376
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+AQTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 377 YILPAIVHI-----NNQPPIRRCDGP--IALVLAPTRELAQQIQQVAADFGHTSYVRNTC 535
+ +P + + +++P R P A VL+PTRELA QI + G +R
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAV 122
Query: 536 VFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGF 709
+ GG + +Q L + +++ATPGRL D + KG +L+ YLVLDEADR+L+ F
Sbjct: 123 LVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKG-FSLKSLKYLVLDEADRLLNEDF 181
Query: 710 EPQI 721
E +
Sbjct: 182 EKSL 185
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 108 bits (259), Expect = 4e-24
Identities = 57/143 (39%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Frame = +2
Query: 302 QGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRCDGPIALVLAPTREL 472
Q P A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 473 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 652
Q++ A G + V GG P Q +++GVE++I TPGR++D L K T L
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 121
Query: 653 QRCTYLVLDEADRMLDMGFEPQI 721
VLDE D ML GF Q+
Sbjct: 122 DNIMTFVLDEVDCMLQRGFRDQV 144
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 107 bits (258), Expect = 6e-24
Identities = 54/167 (32%), Positives = 95/167 (56%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
I+ + + A++L PTRELA Q QV + ++ GG R+ L
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLH 240
Query: 581 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
+ V +++ TPGR++D +KG L+ C LV+DEAD++L F+P +
Sbjct: 241 QPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSL 287
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 107 bits (258), Expect = 6e-24
Identities = 54/167 (32%), Positives = 95/167 (56%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
I+ + + A++L PTRELA Q QV + ++ GG R+ L
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLH 240
Query: 581 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
+ V +++ TPGR++D +KG L+ C LV+DEAD++L F+P +
Sbjct: 241 QPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSL 287
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 107 bits (257), Expect = 7e-24
Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
FE ++ + K +G ++PTP+Q P ++G++++G+AQTGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 401 INNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 580
+ P G ALV+ PTRELA Q+ + G +R + + GG Q L
Sbjct: 119 RLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLV 174
Query: 581 RGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQI 721
IVI TPGR+ LE R +LVLDEADR+LD+GF+ ++
Sbjct: 175 SRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDEL 224
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 105 bits (252), Expect = 3e-23
Identities = 64/174 (36%), Positives = 100/174 (57%), Gaps = 3/174 (1%)
Frame = +2
Query: 209 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--LAYI 382
PI+ F++ D V +GV GYK+P+ IQ + + G++++ AQ+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 383 LPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR 559
+ IV+I++ R+ LVL+P+RELA Q ++ G HT+ + C+ GG
Sbjct: 80 VCQIVNISS----RKVQ---VLVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIG 131
Query: 560 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
E + LERGV V TPGR+ D +++G+ + LVLDE+D ML G + QI
Sbjct: 132 EDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQI 185
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 104 bits (250), Expect = 5e-23
Identities = 62/188 (32%), Positives = 105/188 (55%), Gaps = 1/188 (0%)
Frame = +2
Query: 152 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 331
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 332 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGH 511
+++G A+TGSGKTLA+++PA+ + + R +G +V+ PTRELA Q + VA +
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPR-NGTGVIVICPTRELAIQTKNVAEELLK 186
Query: 512 TSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEAD 688
+ V GG +R +A+ + G +VIATPGRL+D L+ + + LV+DEAD
Sbjct: 187 HHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEAD 246
Query: 689 RMLDMGFE 712
R+L+ FE
Sbjct: 247 RILEENFE 254
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 103 bits (248), Expect = 9e-23
Identities = 64/189 (33%), Positives = 99/189 (52%)
Frame = +2
Query: 155 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 334
E + E S +VH + F+ + + +G+ G+++P+ IQ +G G +
Sbjct: 22 EVLEGQDEFFTSYDDVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD 78
Query: 335 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHT 514
++ AQ+G+GKT + + ++ + +C ALVLAPTRELAQQI++V G
Sbjct: 79 VIQQAQSGTGKTATFCSGVLQQLDFS--LIQCQ---ALVLAPTRELAQQIEKVMRALGDY 133
Query: 515 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRM 694
V+ GG RE R L+ GV +V+ TPGR+ D L++ + VLDEAD M
Sbjct: 134 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEM 193
Query: 695 LDMGFEPQI 721
L GF+ QI
Sbjct: 194 LSRGFKDQI 202
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 103 bits (246), Expect = 2e-22
Identities = 62/175 (35%), Positives = 94/175 (53%)
Frame = +2
Query: 197 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 376
EVH + F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 377 YILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 556
+ + ++ + +C ALVLAPTRELAQQI++V G V+ GG
Sbjct: 93 FCSGVLQQLDYA--LLQCQ---ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSV 147
Query: 557 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
RE R L+ GV +V+ TPGR+ D L + + VLDEAD ML GF+ QI
Sbjct: 148 REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQI 202
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 102 bits (244), Expect = 3e-22
Identities = 60/161 (37%), Positives = 89/161 (55%)
Frame = +2
Query: 239 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 418
PD ++ G+ G+++P+ IQ +G G +++ AQ+G+GKT + + ++
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDIS-- 106
Query: 419 IRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 598
+ +C ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V
Sbjct: 107 LVQCQ---ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVV 163
Query: 599 IATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
+ TPGR+ D L + + VLDEAD ML GF+ QI
Sbjct: 164 VGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQI 204
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 100 bits (240), Expect = 8e-22
Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 6/156 (3%)
Frame = +2
Query: 272 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRCDGPI 442
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 92
Query: 443 ALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDL-ERGVEIVIATPGR 616
++++PTREL+ QI +VA F T V + + GG L E G ++I TPGR
Sbjct: 93 GVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGR 152
Query: 617 LIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQI 721
L D +++ + + L+LDEADR+LDMGF+ Q+
Sbjct: 153 LSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQV 188
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 98.3 bits (234), Expect = 4e-21
Identities = 60/181 (33%), Positives = 95/181 (52%), Gaps = 1/181 (0%)
Frame = +2
Query: 182 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 361
T G+E PI F + + V +GV G+++P+ IQ + + G++++ AQ+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 362 GKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 538
GKT L ++ R AL+L+PTRELA Q ++ G H + + C+
Sbjct: 84 GKTSMIALSVCQVVDTSS--REVQ---ALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
Query: 539 FGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQ 718
GG E R LE GV +V TPGR+ D +++ + + L+LDE+D ML GF+ Q
Sbjct: 139 -GGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQ 197
Query: 719 I 721
I
Sbjct: 198 I 198
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 97.9 bits (233), Expect = 6e-21
Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 8/164 (4%)
Frame = +2
Query: 254 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCD 433
+ +K G++ T +Q PI + GK+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 434 GP---IALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIV 598
I LV+ PTRELA Q A H S + G EQ R +I+
Sbjct: 455 RQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQIL 514
Query: 599 IATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQI 721
+ATPGRL D +E + T L LVLDEAD +LDMGF I
Sbjct: 515 VATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDI 558
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 96.7 bits (230), Expect = 1e-20
Identities = 62/164 (37%), Positives = 87/164 (53%), Gaps = 8/164 (4%)
Frame = +2
Query: 254 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPI---R 424
+ +K GY+ T +Q PI + GK+++ A+TG+GKT+A++LP+I + PP
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 425 RCDGPIALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIV 598
+ +ALV+ PTRELA Q A H S + G EQ R +I+
Sbjct: 127 KRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQIL 186
Query: 599 IATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQI 721
+ATPGRL D +E T L+ LVLDEAD +LDMGF I
Sbjct: 187 VATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDI 230
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 96.7 bits (230), Expect = 1e-20
Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 8/175 (4%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
F++ +G++ G+K T +Q P+ + GK+++ A+TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 401 INNQPPIRRCDGP---IALVLAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQA 568
+ PP R + I LV+ PTRELA Q + + + V GG +
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQ 201
Query: 569 RDLERG-VEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQI 721
R L++ +I++ATPGRL D ++ + T L LVLDEAD +LDMGF +I
Sbjct: 202 RRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREI 256
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 92.7 bits (220), Expect = 2e-19
Identities = 52/172 (30%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Frame = +2
Query: 212 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 391
++ F + D ++G+K Y + T +Q+ P A+ G++++G A+TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 392 IVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 571
+ ++ + DG ++++PTRELA Q V G + GG + +
Sbjct: 130 LEKLHRERWSPE-DGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEK 188
Query: 572 DLERGVEIVIATPGRLIDFLEKGTTNLQ--RCTYLVLDEADRMLDMGFEPQI 721
+ + I++ PGRL+ +++ T N + + L+LDEADR+LD F+ Q+
Sbjct: 189 ERVHEMNILVCAPGRLLQHMDE-TPNFECPQLQILILDEADRVLDSAFKGQL 239
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 92.3 bits (219), Expect = 3e-19
Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 6/151 (3%)
Frame = +2
Query: 287 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ---PPIRRCDGPIALVLA 457
TP+QA P+ S K++ A TGSGKTLA+++P + + PP + + ++++
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIIS 97
Query: 458 PTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDL-ERGVEIVIATPGRLIDFL 631
PTREL+ QI VA F T + V + + GG + + + E G ++I TPGRL D +
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIM 157
Query: 632 EK-GTTNLQRCTYLVLDEADRMLDMGFEPQI 721
E+ + + L+LDEADR+L+MGF+ Q+
Sbjct: 158 ERMEILDFRNLEILILDEADRLLEMGFQRQV 188
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 92.3 bits (219), Expect = 3e-19
Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 6/192 (3%)
Frame = +2
Query: 164 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 331
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 332 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADF-- 505
A TGSGKT A+I P ++ + DG A++L+P RELA Q +
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRP----STDGIRAVILSPARELAAQTAREGKKLIK 235
Query: 506 GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 685
G ++R P + A + +++I+TP RL ++ +L + YLVLDE+
Sbjct: 236 GSNFHIR----LMTKPLVKTADFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDES 291
Query: 686 DRMLDMGFEPQI 721
D++ + QI
Sbjct: 292 DKLFEQSLLKQI 303
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 88.6 bits (210), Expect = 4e-18
Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 19/172 (11%)
Frame = +2
Query: 248 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHI------- 403
+ + + + +KEPT IQ + +A GK+++G A+TGSGKTLA+ LP + +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 404 -------NNQPPIRRCDGPI-ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 559
+ DG + AL++ PTRELA Q+ + + V+ + GG
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSE 320
Query: 560 EQARDLERGVEIVIATPGRLIDFL---EKGTTNLQRCTYLVLDEADRMLDMG 706
+Q R L+ EIV+ATPGRL + + EK L ++ VLDEADRM++ G
Sbjct: 321 KQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERG 372
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 88.6 bits (210), Expect = 4e-18
Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
F E + + + +K + P IQA + + GK+ + Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 401 INN---QPPIRRCDG-PIALVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKREQ 565
+ Q + G P +VL PT ELA Q+ + R+ V GG +R Q
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQ 495
Query: 566 ARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 688
+LE+GV+++IATPGR + +G L +LDE D
Sbjct: 496 LENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVD 536
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 87.8 bits (208), Expect = 6e-18
Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 4/154 (2%)
Frame = +2
Query: 272 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRCDGPI 442
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 93
Query: 443 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 622
++++PTREL+ QI +VA + + V E E G ++I TPGRL
Sbjct: 94 GVIISPTRELSAQIHKVARAV-RLDFAKCREVEADMNTLE-----EEGANLLIGTPGRLS 147
Query: 623 DFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQI 721
D +++ + + L+LDEADR+LDMGF+ Q+
Sbjct: 148 DMMKRMEFLDFRNLEILILDEADRLLDMGFQKQV 181
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 87.4 bits (207), Expect = 8e-18
Identities = 57/177 (32%), Positives = 85/177 (48%), Gaps = 10/177 (5%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
FEE PD + ++ G+ PT +Q+ P + G + V + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 401 INNQPPIRRCDGP--------IALVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAP 553
I R A+++AP+REL QI ++V G + GGA
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGAN 231
Query: 554 KREQARDLERG-VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
+ Q L++ IV+ TPGR+ + + G + C +LVLDE D +L F I
Sbjct: 232 RMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDI 288
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 85.4 bits (202), Expect = 3e-17
Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 7/198 (3%)
Frame = +2
Query: 149 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 328
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 329 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI-RRCDGPIALVLAPTRELAQQIQQVAADF 505
K++V A+TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+ +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSL 143
Query: 506 GHTSYVRNTCV-FGGAPKREQARDLERGV-EIVIATPGRLIDFLEKG----TTNLQRCTY 667
V+ V + R+ G+ EI+++TP + G T + +
Sbjct: 144 IELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSI 203
Query: 668 LVLDEADRMLDMGFEPQI 721
LVLDEAD +L G+E +
Sbjct: 204 LVLDEADLLLSYGYEDNL 221
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 81.4 bits (192), Expect = 6e-16
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 9/176 (5%)
Frame = +2
Query: 221 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 400
F+E+ + + G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 401 I----NNQPPIRRCDGPIALVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKRE 562
+ N+ + + AL+L PTRELA QI + A H T + G K +
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLD 449
Query: 563 QARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQI 721
Q R +I+IATPGRL+D +E T+ L ++DEAD +LD+GF +
Sbjct: 450 QQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDV 505
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 81.0 bits (191), Expect = 7e-16
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 15/223 (6%)
Frame = +2
Query: 98 NKNFYDPH---PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 259
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 260 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI----NNQPPIRR 427
+ G + T +Q + GK+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHK 449
Query: 428 CDGPIALVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 601
L+L PTRELA QI + A H T + G + +Q R +I+I
Sbjct: 450 VAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILI 509
Query: 602 ATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQI 721
ATPGRL+D +E T+ L ++DEAD +LD+GF+ +
Sbjct: 510 ATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDV 552
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 70.1 bits (164), Expect = 1e-12
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 5/188 (2%)
Frame = +2
Query: 149 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMS 325
E E N VT SG + FE+ N + +G+ M +++P+ IQA P+ M+
Sbjct: 70 EEPEDSNIKAVT-SGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMT 128
Query: 326 G--KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAA 499
K+L+ A GSGKT ++L + ++ P +R P AL + PTRELA Q +V
Sbjct: 129 PPHKHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQ 183
Query: 500 DFGHTSYVRNTCVFGGAPKREQA--RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 673
G + + + + A R +VI TPG L ++ L LV
Sbjct: 184 KMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILV 243
Query: 674 LDEADRML 697
DEAD ML
Sbjct: 244 FDEADHML 251
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 66.9 bits (156), Expect = 1e-11
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Frame = +2
Query: 239 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 418
P+++ ++ +G+ PT IQ + P +G++ + AQTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQR- 142
Query: 419 IRRCDGPIALVLAPTRELAQQIQQVAADFGHTSY--VRNTCVF----GGAPKREQARDLE 580
A+++ PTREL Q+ +VA S V+ V GG +R ++
Sbjct: 143 ----SSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKA 198
Query: 581 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 688
I++AT L LEK + LV+DE D
Sbjct: 199 EPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVD 234
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 66.1 bits (154), Expect = 2e-11
Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Frame = +2
Query: 272 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPI-AL 448
G++ P+ +Q + P A+ G +++ A++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 449 VLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATPGR 616
VL TRELA QI F ++Y+ +T VF G + +DL + IV+ TPGR
Sbjct: 119 VLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGR 176
Query: 617 LIDFLEKGTTNLQRCTYLVLDEADRMLD 700
++ + +L+ + +LDE D+ML+
Sbjct: 177 VLALAREKDLSLKNVRHFILDECDKMLE 204
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 66.1 bits (154), Expect = 2e-11
Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Frame = +2
Query: 272 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPI-AL 448
G++ P+ +Q + P A+ G +++ A++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 449 VLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATPGR 616
VL TRELA QI F ++Y+ +T VF G + +DL + IV+ TPGR
Sbjct: 119 VLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGR 176
Query: 617 LIDFLEKGTTNLQRCTYLVLDEADRMLD 700
++ + +L+ + +LDE D+ML+
Sbjct: 177 VLALAREKDLSLKNVRHFILDECDKMLE 204
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 65.3 bits (152), Expect = 4e-11
Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 27/182 (14%)
Frame = +2
Query: 248 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQP 415
+++ ++ MG P+Q W I G +++ + TGSGKTL+Y LP + + ++P
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRP 91
Query: 416 PIRRCDGPIALVLAPTRELAQQIQQV------AADFGHTSYVRNTCVFGG------APKR 559
RC ALV+ PTR+LA Q++ V A S V + + G PK
Sbjct: 92 V--RCLR--ALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKL 147
Query: 560 EQ---------ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMG 706
+ +++LE V+I++ATPGRL+D + KG T L+ YLV+DE DR+L
Sbjct: 148 DAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREA 206
Query: 707 FE 712
++
Sbjct: 207 YQ 208
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 58.8 bits (136), Expect = 3e-09
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Frame = +2
Query: 242 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN---- 409
D V ++ G+ P+ QA P +SGK+++ A+TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALD 148
Query: 410 QPPIRRCDGP-----IALVLAPTRELAQQIQQVA---ADFGHTSYVRNTCVFGGAPKREQ 565
R + P I+L+L P L +Q+ ++ D +R V G ++
Sbjct: 149 SEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPDR 208
Query: 566 ARDLERGVEIVIATPGRLIDFLE-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQI 721
D I+++TP L++ +E K L+ RC Y+V DEAD +L F+ QI
Sbjct: 209 LPD------IIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQI 258
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 53.6 bits (123), Expect = 1e-07
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Frame = +2
Query: 347 AQTGSGKTLAYILPAIVHINNQPPIRRCDGPI-ALVLAPTRELAQQIQQVAADFGHTSYV 523
A++G GKT ++L + I P G + ALVL TRELA QI F ++Y+
Sbjct: 7 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVRF--STYL 58
Query: 524 RNT--CVFGGAPKREQARDLERGV--EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 691
+T VF G + +DL + IV+ TPGR++ + +L+ + +LDE D+
Sbjct: 59 PDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDK 118
Query: 692 MLD 700
ML+
Sbjct: 119 MLE 121
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 37.1 bits (82), Expect = 0.012
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Frame = +2
Query: 251 QQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRC 430
+ +K +G QA+ A++GKN+ T SGK+L Y +P + C
Sbjct: 383 KSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVPVFEELCKD--TNSC 440
Query: 431 DGPIALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQAR 571
AL L PT+ LAQ + +D G + + G P +++ R
Sbjct: 441 ----ALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTR 485
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 431 DGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER-GVEIVIAT 607
+ P L L P++ A Q++ V + + GAP Q L+ E ++AT
Sbjct: 195 NSPFLLYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGLKSVEPEFIVAT 253
Query: 608 PGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 709
P RL++ + ++ + LV+DE + G+
Sbjct: 254 PERLLEIVTLKGVDISNVSLLVIDELGSLCSGGY 287
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.9 bits (69), Expect = 0.44
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = +2
Query: 170 KHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 349
K V +S + P Y E D + G K P+Q Q +M K+ +
Sbjct: 170 KPSVQISNKDHETP-SYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLM 228
Query: 350 QTGSGKTLAYILPA 391
TG GK+L Y LPA
Sbjct: 229 PTGGGKSLCYQLPA 242
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 31.5 bits (68), Expect = 0.58
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Frame = +2
Query: 320 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAA 499
M+G++++ + G GK+L Y LPA++ G LV++P L Q A
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAMLR-----------GGTTLVVSPLLSLIQDQVMGLA 150
Query: 500 DFGHTSYVRNTCVFGGAPKREQARDLERG---VEIVIATPGRLIDFLEKGTTNLQRC 661
G ++Y+ T G ++ + LE+G ++I+ TP + + ++ + L++C
Sbjct: 151 ALGISAYML-TSTSGKENEKFVYKALEKGEDDLKILYVTPEK-VSKSKRFMSKLEKC 205
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 263 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 397
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 272 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 397
GY Q Q + + G + + V TG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 101 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 256
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 101 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 256
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +2
Query: 53 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQY 220
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 221 FEE 229
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +2
Query: 53 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQY 220
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 221 FEE 229
EE
Sbjct: 811 NEE 813
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 110 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 286
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 287 TPIQAQGWPIAMS 325
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 110 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 286
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 287 TPIQAQGWPIAMS 325
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 110 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 286
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 287 TPIQAQGWPIAMS 325
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.9 bits (59), Expect = 7.2
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Frame = +2
Query: 329 KNLVGVAQTGSGKTL-AYILPAIVHINNQPPIRRCDGPIALVLAPTRELAQQIQQVAADF 505
KN + +TG+GKTL A +L VH + R+ +++ L P L Q +V +
Sbjct: 263 KNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKM---LSVFLVPKVPLVYQQAEVIRN- 318
Query: 506 GHTSY-VRNTCVFGGA---PKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 673
T + V + C G R R+ E ++++ T L++ L ++ L+
Sbjct: 319 -QTCFQVGHYCGEMGQDFWDSRRWQREFE-SKQVLVMTAQILLNILRHSIIRMETIDLLI 376
Query: 674 LDE 682
LDE
Sbjct: 377 LDE 379
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 611 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 308 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 344
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
putative
Length = 2172
Score = 27.5 bits (58), Expect = 9.5
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Frame = +2
Query: 275 YKEPTPIQAQGWPIAMS-GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALV 451
+K P+Q Q + + + N+V A TGSGKT+ AI+ + + P D + +V
Sbjct: 1349 FKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEF-AILRNHLEGP----DSAMRVV 1403
Query: 452 -LAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR--L 619
+AP +A +Q + FG +R + G + LE+G +I+I+TP +
Sbjct: 1404 YIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTG--ETLLDLKLLEKG-QIIISTPEKWDA 1460
Query: 620 IDFLEKGTTNLQRCTYLVLDE 682
+ K +Q+ + ++DE
Sbjct: 1461 LSRRWKQRKYIQQVSLFIVDE 1481
>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 427
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 611 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 721
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 374 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 410
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 27.5 bits (58), Expect = 9.5
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Frame = +2
Query: 275 YKEPTPIQAQGWPIAMS-GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRCDGPIALV 451
+K P+Q Q + + + N++ A TGSGKT+ AI+ +++ P D + +V
Sbjct: 1348 FKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEF-AILRNHHEGP----DATMRVV 1402
Query: 452 -LAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATP 610
+AP +A +Q + FG +R + G + LE+G +I+I+TP
Sbjct: 1403 YIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETAL--DLKLLEKG-QIIISTP 1454
>At1g13810.1 68414.m01621 expressed protein ; expression supported
by MPSS
Length = 303
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 124 RMWIIKVFVERLE*NRIPIWASHVLPSREFF 32
R+W F E ++ W +HVLP+RE +
Sbjct: 222 RVWRDTAFWEDMKPALFDFWQNHVLPAREIY 252
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,260,223
Number of Sequences: 28952
Number of extensions: 378847
Number of successful extensions: 1207
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -