Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0359
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 274 3e-74
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 274 5e-74
08_02_0657 - 19749835-19751942,19753123-19753561 195 3e-50
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 33 0.25
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412... 29 4.1
06_01_0057 - 483710-484309 28 7.1
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 27 9.4
07_03_1607 + 28119886-28120239,28121097-28121153,28121377-281214... 27 9.4
03_02_0401 - 8146758-8146912,8147151-8147235,8147502-8147567,814... 27 9.4
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 274 bits (673), Expect = 3e-74
Identities = 124/189 (65%), Positives = 149/189 (78%)
Frame = +3
Query: 66 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 245
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
Query: 246 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 425
RK+T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHILPIDD+V
Sbjct: 71 RKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTV 130
Query: 426 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 605
EG+TGNLF+ +LKPYF+EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I
Sbjct: 131 EGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIVAPDTEIF 190
Query: 606 CDGEPIKRE 632
CDGEPIKRE
Sbjct: 191 CDGEPIKRE 199
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 274 bits (671), Expect = 5e-74
Identities = 126/189 (66%), Positives = 149/189 (78%)
Frame = +3
Query: 66 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 245
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Query: 246 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 425
RK+T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHILPIDD+V
Sbjct: 71 RKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTV 130
Query: 426 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 605
EG+TGNLF+ +LKPYF+EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I
Sbjct: 131 EGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVAPDTEIF 190
Query: 606 CDGEPIKRE 632
CDGEPIKRE
Sbjct: 191 CDGEPIKRE 199
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 195 bits (475), Expect = 3e-50
Identities = 96/189 (50%), Positives = 132/189 (69%), Gaps = 7/189 (3%)
Frame = +3
Query: 87 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 251
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 252 ETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEG 431
E VC D++CPD ++R+ D+V++ PCP+++ KRV + P DDSVEG
Sbjct: 76 EAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEG 135
Query: 432 LTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDP-SPFCIVAPDTVIHC 608
++G+LFE YLKPYFM+A RP+ + D F+VRG M AVEFKV++T+P + IVA DT I C
Sbjct: 136 ISGDLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFC 195
Query: 609 D-GEPIKRE 632
D G+P+KRE
Sbjct: 196 DEGDPVKRE 204
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 461 EAVLHGGLPSDPS*RHLHGPGGHARRRVQSGRNRSITILHRG 586
E++ H L + S HLHG G RR + +GR R+I +L G
Sbjct: 1248 ESLPHETLQASSSAVHLHGHHGRLRRFLAAGRLRAIDVLGHG 1289
>07_03_1644 -
28338535-28339103,28339512-28340326,28341104-28341205,
28342469-28342594,28342782-28343071
Length = 633
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 557 FDHFELDGAHAPPDHEGVVTMDRTVSLHEVRLQVYFE 447
F+ L+ DHE V+ D+ VSL +V++ Y+E
Sbjct: 401 FEFIPLEDGLRLTDHEEVIENDKLVSLVDVKVGCYYE 437
>06_01_0057 - 483710-484309
Length = 199
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 91 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSK 237
Y P ART P ++ + A S W F WS+ S V+T+ S+
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +3
Query: 423 VEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPF 575
VEG+TG V + F A P + + GG A V PSPF
Sbjct: 569 VEGITGVAMVVLMTVSFTLATHPFRKGEKGGSGGGAAATVLPTVARLPSPF 619
>07_03_1607 +
28119886-28120239,28121097-28121153,28121377-28121464,
28121557-28121686,28121783-28121962,28122291-28122759
Length = 425
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 472 SWRLTVRSIVTTPSWSGGACAPSSSK 549
SWR VR IV TP SG P S K
Sbjct: 92 SWRGIVREIVRTPEASGNLTFPISLK 117
>03_02_0401 -
8146758-8146912,8147151-8147235,8147502-8147567,
8147744-8147802,8147911-8148013,8148227-8148358,
8148447-8148527,8148729-8148821,8148978-8149061,
8149242-8149300,8149405-8149481,8149639-8149789,
8150302-8150437
Length = 426
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 477 EAYRPIHRDDTFMVRGGMRAVE 542
+AYRP H D T+ + G+RAV+
Sbjct: 148 KAYRPSHADATYDFKYGVRAVQ 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,345
Number of Sequences: 37544
Number of extensions: 389921
Number of successful extensions: 1084
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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