Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0359
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        126   1e-29
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)                     29   2.4  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         29   3.1  
SB_231| Best HMM Match : Granulin (HMM E-Value=5.4)                    28   7.2  
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)                  27   9.6  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  126 bits (305), Expect = 1e-29
 Identities = 61/91 (67%), Positives = 72/91 (79%)
 Frame = +3

Query: 84  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVC 263
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVC
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVC 64

Query: 264 IVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 356
           IVLSDD   D+KIRM             DVV
Sbjct: 65  IVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 37/43 (86%), Positives = 42/43 (97%)
 Frame = +3

Query: 504 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKRE 632
           D F+VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+KRE
Sbjct: 104 DMFLVRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKRE 146


>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
          Length = 672

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 138 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDN 284
           +EE + D   +V+ S      LQL R  T +LK    K ++ +++ D++
Sbjct: 141 IEERIEDSCFLVSTSTTNSTTLQLLRNMTGILKSDSDKVSIGVLVDDES 189


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 419  IINWQYVDSFS-IFH*RTRSYGYHIRKTHT 333
            II W Y +S+  IFH  TR +G H+  T T
Sbjct: 2525 IIAWVYPESWGPIFHYNTRGWGVHLWLTRT 2554


>SB_231| Best HMM Match : Granulin (HMM E-Value=5.4)
          Length = 85

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 419 IINWQYVDSFSIFH*RTRSYGYHIRKTH--TKVVSHD 315
           +++ Q++D+  +FH   RS    +R TH   +VV HD
Sbjct: 35  VVSNQFIDTALLFHFNHRSASDSVRLTHEQVQVVKHD 71


>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
          Length = 328

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 345 SDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPI 494
           S+  +I P P+   GK  H+      V GL     +  ++ YF +AY P+
Sbjct: 81  SEADAIDPKPAAPIGKPPHLRVKKIFVGGLKPETSDEKIREYFGKAYAPV 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,806,790
Number of Sequences: 59808
Number of extensions: 437214
Number of successful extensions: 1287
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)