Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0359
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   262   1e-70
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   254   5e-68
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   254   5e-68
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    29   2.1  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    29   2.1  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    29   2.8  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   6.4  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  262 bits (642), Expect = 1e-70
 Identities = 115/186 (61%), Positives = 152/186 (81%)
 Frame = +3

Query: 75  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 254
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 255 TVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGL 434
           +V I++SD++CP+EK+RM             DVVSI P P++ YG R+H+LPIDD++EGL
Sbjct: 73  SVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDTIEGL 132

Query: 435 TGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDG 614
           TGNLF+V+LKPYF+EAYRP+H+ D F V+  MR VEFKVVET+P+P CIV+PDT+IH +G
Sbjct: 133 TGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEG 192

Query: 615 EPIKRE 632
           +PIKRE
Sbjct: 193 DPIKRE 198


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  254 bits (621), Expect = 5e-68
 Identities = 116/186 (62%), Positives = 151/186 (81%)
 Frame = +3

Query: 75  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 254
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 255 TVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGL 434
           TV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+LPIDD++EGL
Sbjct: 73  TVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGL 131

Query: 435 TGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDG 614
           TGNLF+V+L+PYF +AYRP+H+ D F V+  MR VEFKVVETDP+P CIVAPDTVIH +G
Sbjct: 132 TGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEG 191

Query: 615 EPIKRE 632
           +PIKRE
Sbjct: 192 DPIKRE 197


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  254 bits (621), Expect = 5e-68
 Identities = 116/186 (62%), Positives = 151/186 (81%)
 Frame = +3

Query: 75  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 254
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 255 TVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGL 434
           TV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+LPIDD++EGL
Sbjct: 73  TVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGL 131

Query: 435 TGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDG 614
           TGNLF+V+L+PYF +AYRP+H+ D F V+  MR VEFKVVETDP+P CIVAPDTVIH +G
Sbjct: 132 TGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEG 191

Query: 615 EPIKRE 632
           +PIKRE
Sbjct: 192 DPIKRE 197


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform a protein.
          Length = 1212

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 554 DHFELDGAHAPPDHEGVVTMDR-TVSLHEVRLQVYFE 447
           D+ + D    PPD  GVVT ++   S++ +R +V FE
Sbjct: 222 DYSKKDSTFKPPDFTGVVTCEKPDKSIYTIRAKVEFE 258


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform b protein.
          Length = 1454

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 554 DHFELDGAHAPPDHEGVVTMDR-TVSLHEVRLQVYFE 447
           D+ + D    PPD  GVVT ++   S++ +R +V FE
Sbjct: 222 DYSKKDSTFKPPDFTGVVTCEKPDKSIYTIRAKVEFE 258


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +1

Query: 64  WQIIKVLMIYRPRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKAN 243
           W    +  + R RSS+  +DP +S S   S  T+ S      K S    S  + S +  +
Sbjct: 56  WTSASMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANRS 115

Query: 244 AARKPFASCSQMIIALMR 297
            A +P    S   + L R
Sbjct: 116 PANRPSLHSSTSPVTLQR 133


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +1

Query: 64  WQIIKVLMIYRPRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKAN 243
           W    +  + R RSS+  +DP +S S   S  T+ S      K S    S  + S +  +
Sbjct: 56  WTSASMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANRS 115

Query: 244 AARKPFASCSQMIIALMR 297
            A +P    S   + L R
Sbjct: 116 PANRPSLHSSTSPVTLQR 133


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 54  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 203
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 54  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 203
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,221,790
Number of Sequences: 27780
Number of extensions: 322623
Number of successful extensions: 812
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)