Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0359
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.61 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.5  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 24/105 (22%), Positives = 39/105 (37%)
 Frame = -1

Query: 413 NWQYVDSFSIFH*RTRSYGYHIRKTHTKVVSHDTVHPNFLIRAIII*EHDANGFLAAFAF 234
           +WQ  D  S+        G  + +  ++++     H    + A I+    ++  L     
Sbjct: 240 HWQ--DQMSLPQMLADKIGKMVNQKFSELIQSKPQHARRKVLAGIVQTKGSDAELICVTT 297

Query: 233 EQDCVTTEELKLLHFGL*KCHD*VVIADCFFDNETVGSVLATEDR 99
              CV+ E L +    L  CH  VV   C  +       L TEDR
Sbjct: 298 GTKCVSGEHLSVSGGALNDCHAEVVARRCLCEYLYKQLELHTEDR 342


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 79 LLLSAILFKIYC*NIRTIIIFIT 11
          +LLS+  F++    + TI+IF+T
Sbjct: 1  MLLSSAWFEVIAAVLLTILIFVT 23


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 8   WRYKNYNSSY 37
           + YKNYN++Y
Sbjct: 309 YNYKNYNNNY 318


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 8   WRYKNYNSSY 37
           + YKNYN++Y
Sbjct: 320 YNYKNYNNNY 329


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 568 DGSVSTTLNSTARMPPRTMKVSS 500
           +G   TTLN+T    P  ++++S
Sbjct: 298 NGPTQTTLNATTLFCPPNLRLTS 320


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 568 DGSVSTTLNSTARMPPRTMKVSS 500
           +G   TTLN+T    P  ++++S
Sbjct: 388 NGPTQTTLNATTLFCPPNLRLTS 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,522
Number of Sequences: 438
Number of extensions: 3870
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)