Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0359
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   277   4e-75
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   274   3e-74
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   259   1e-69
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    31   0.84 
At1g30750.1 68414.m03758 expressed protein                             29   2.6  
At5g10520.1 68418.m01218 protein kinase family protein contains ...    28   4.5  
At1g56010.2 68414.m06428 transcription activator NAC1 (NAC1) con...    28   4.5  
At1g56010.1 68414.m06427 transcription activator NAC1 (NAC1) con...    28   4.5  

>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  277 bits (679), Expect = 4e-75
 Identities = 121/189 (64%), Positives = 153/189 (80%)
 Frame = +3

Query: 66  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 245
           +D+KS  D STAIL RK  PNRL+V+EA++DDNSVV+L  A ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67

Query: 246 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 425
           RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKRVHILP+DD+V
Sbjct: 68  RKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTV 127

Query: 426 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 605
           EG+TGNLF+ YLKPYF+EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +C+VAPDT I 
Sbjct: 128 EGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIF 187

Query: 606 CDGEPIKRE 632
           C+GEP+KRE
Sbjct: 188 CEGEPVKRE 196


>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  274 bits (672), Expect = 3e-74
 Identities = 119/189 (62%), Positives = 152/189 (80%)
 Frame = +3

Query: 66  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 245
           +D+K+  D STAIL RK  PNRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67

Query: 246 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 425
           RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKRVHILP+DD+V
Sbjct: 68  RKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTV 127

Query: 426 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 605
           EG+TGNLF+ YLKPYF+EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +C+VAPDT I 
Sbjct: 128 EGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIF 187

Query: 606 CDGEPIKRE 632
           C+GEP+KRE
Sbjct: 188 CEGEPVKRE 196


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  259 bits (635), Expect = 1e-69
 Identities = 113/190 (59%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
 Frame = +3

Query: 66  ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 242
           +D+K +  D STAIL +K   NRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK
Sbjct: 8   SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67

Query: 243 RRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDS 422
           +RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYG RVHILP+DD+
Sbjct: 68  KRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDT 127

Query: 423 VEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVI 602
           +EG++GN+F+ YLKPYF+EAYRP+ + D F+VRGGMR++EFKV+ETDP+ +C+VAPDT I
Sbjct: 128 IEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEI 187

Query: 603 HCDGEPIKRE 632
            C+GEPIKRE
Sbjct: 188 FCEGEPIKRE 197


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -1

Query: 218 TTEELKLLHFGL*KCHD*VVIAD 150
           TTEELK+ H+ L KC D +V+A+
Sbjct: 3   TTEELKISHYKLYKCFDFLVVAN 25


>At1g30750.1 68414.m03758 expressed protein
          Length = 212

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +1

Query: 103 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKANAARKPFAS 267
           SS    +P +      S++      F++P  + FN  + + S S ++A  +PF +
Sbjct: 115 SSTGLNNPILGQPSTSSSLNQPLTGFNQPSSTGFNQPISSSSSSSSSAQNQPFTN 169


>At5g10520.1 68418.m01218 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 467

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 61  KWQIIKVLMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 204
           ++ +I +L  Y   R ++ R  P   L+  +SA T +++   +P W NF
Sbjct: 95  RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141


>At1g56010.2 68414.m06428 transcription activator NAC1 (NAC1)
           contains Pfam PF02365: No apical meristem (NAM) domain;
           identical to NAC1 GB:AAF21437 GI:6649236 from
           [Arabidopsis thaliana]
          Length = 324

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 620 RFTVTVYYGIRSHDAKW*WICFDHFELDGAHAPPDH 513
           R T+  Y G      K  W+  + F L G+H PP+H
Sbjct: 120 RKTLVFYQGRAPRGRKTDWVMHE-FRLQGSHHPPNH 154


>At1g56010.1 68414.m06427 transcription activator NAC1 (NAC1)
           contains Pfam PF02365: No apical meristem (NAM) domain;
           identical to NAC1 GB:AAF21437 GI:6649236 from
           [Arabidopsis thaliana]
          Length = 257

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 620 RFTVTVYYGIRSHDAKW*WICFDHFELDGAHAPPDH 513
           R T+  Y G      K  W+  + F L G+H PP+H
Sbjct: 53  RKTLVFYQGRAPRGRKTDWVMHE-FRLQGSHHPPNH 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,403,941
Number of Sequences: 28952
Number of extensions: 302003
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)