Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0358
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    32   0.081
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    30   0.33 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    29   0.76 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.76 
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    29   1.0  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   2.3  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    27   2.3  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   3.1  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   4.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   4.0  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.0  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   5.4  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    26   7.1  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    26   7.1  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   7.1  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.4  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   9.4  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 32.3 bits (70), Expect = 0.081
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 444 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 602
           I VE    QPEDSK T+V      +S +EK +    + S D  A + +++  +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
 Frame = +3

Query: 447 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESD 626
           +VEE  A+   S         E S   KPSA  AE   D    I   V  I L    +  
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347

Query: 627 AAAVPEI---KTPEAADAPKLADNPVDEDK 707
           +    E+   KTP   DAP       +E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
 Frame = +3

Query: 402 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 578
           K S+ P+ +  +    KVEEP+ + ++   + + TV +  +E+ P        A S    
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505

Query: 579 PNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDEDKP 710
              VKK    P+ E       E   P+A  AP      V+E +P
Sbjct: 506 SEDVKK---EPSEEKKLEVSDE--APKA--APLAESKKVEEKEP 542


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 399 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 569
           AK S   D   K +  K  + A+ PE SK  V+       KEE  S +++E S+  +
Sbjct: 41  AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 25/75 (33%), Positives = 35/75 (46%)
 Frame = +3

Query: 474 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKT 653
           E+S   +    +E+SK  KP+ TD            N  K+I++A    S  A  P+  T
Sbjct: 33  EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82

Query: 654 PEAADAPKLADNPVD 698
           P AA AP  A + VD
Sbjct: 83  P-AAVAPVEATSAVD 96


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = +3

Query: 486 TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAA 665
           T+  A+  E   ++  S+   + SA   A I N+    DL PN + +   +      +  
Sbjct: 42  TDKNASNQEQGTKKLESSVGEQESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVADTK 101

Query: 666 DAPKLADNPVDE 701
             PK+ D   D+
Sbjct: 102 HKPKIGDIAADD 113


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 454 KNQLLSLKIQKLKYKLPSLKFQKKKNL 534
           KN LLS KI +  Y+  S+++QK KN+
Sbjct: 40  KNGLLSPKITQRFYQNSSIQYQKDKNI 66


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +3

Query: 480 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEI-KTP 656
           +K+E  A +A    EE  S        +  A       K  +   V SDA  V +  KT 
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311

Query: 657 EAADAPKLADNPVDEDKPAD 716
           E AD     +  +DE KPAD
Sbjct: 312 EDADEEPETEENLDEFKPAD 331


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 507 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPNVESDAAAVPEIKTPEA 662
           A   K+ +PS  +   +A   +  PN VK +  D+ P   +      +I  PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
 Frame = +3

Query: 405  SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS----ADSAA 572
            SS   DA AKS   +  EPA +P +   + ++T     + EK + TD   +        A
Sbjct: 898  SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTA 956

Query: 573  IIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDE 701
             + + V + ++  +V     +      P++   PK  +   D+
Sbjct: 957  DVNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDD 999


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +3

Query: 495 QATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAADAP 674
           Q T+A       PS      +A S   +P     I+   N+  +A ++PE   P A  + 
Sbjct: 362 QDTLASNHVPSAPSNESVSSAAPSKIPVPEEAS-INEHSNITDEAVSLPEPVYPNAPTSA 420

Query: 675 KLADNPV--DEDKPAD 716
               NP   DE +P +
Sbjct: 421 VSVHNPTISDEAEPTE 436


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 338 VFWGYIVLFGLWYSGYLVVTNW 273
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 420 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 566
           D   +   I  E PA    + K   +  + + S  E+PS T  EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
 Frame = +3

Query: 468 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID-------LAPNVESD 626
           +PED++  V     E+          A+  A    +IP  +KK         + PN+E  
Sbjct: 118 KPEDNQDPVIDIAHEVHYANVRLLAHAKTDAGEPVLIPVKLKKHSSTNLRSIIRPNIEGV 177

Query: 627 AAAVPEIKTPEAADAPKLADNPVDEDKP 710
                 +  P+  D PK  +  +D   P
Sbjct: 178 QIHTIHLPRPKTEDKPKDPEGKLDTKNP 205


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +3

Query: 456 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAA 635
           EP  +P+ S      T  +I+ + + +   + GS    A++ +++K+ID+  ++ES  A+
Sbjct: 483 EPFKRPQSSSAPTILT--DINGDFEMALGASGGSRIVTAVLDSIIKRIDMDYDIESMVAS 540


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 426 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 563
           ++K  + KVEE  ++  D K +   ++    KEEK   TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 423 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 560
           AEA + D   + P       K  V  +VAE  ++E  +  ++E  A
Sbjct: 76  AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 408 SEIPDAEAKSAD-IKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 584
           +E+P    K    +K ++P ++P + +T+V+   A  ++E +P  +D +          +
Sbjct: 227 AELPTEPPKQTRFLKSQQPTSEP-NVETQVEEQPALENEESEPEPSDDQF---------D 276

Query: 585 MVKKIDLAPNVE 620
           +V+++D+ PNV+
Sbjct: 277 LVEEVDVLPNVD 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,306
Number of Sequences: 5004
Number of extensions: 37301
Number of successful extensions: 138
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)