Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0358
(788 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 37 0.018
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 36 0.031
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil... 34 0.094
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil... 34 0.094
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 34 0.12
At4g31880.1 68417.m04531 expressed protein 33 0.16
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.16
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family... 32 0.38
At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /... 32 0.38
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ... 32 0.50
At3g49990.1 68416.m05466 expressed protein 31 0.66
At1g12080.2 68414.m01397 expressed protein 31 0.87
At5g63550.1 68418.m07976 expressed protein 31 1.2
At1g34590.1 68414.m04299 hypothetical protein 30 2.0
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 2.7
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 29 2.7
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor... 27 3.1
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 29 3.5
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 29 3.5
At1g12080.1 68414.m01396 expressed protein 29 3.5
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 4.6
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 29 4.6
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 28 6.1
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi... 28 6.1
At2g02170.1 68415.m00153 remorin family protein contains Pfam do... 28 8.1
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 36.7 bits (81), Expect = 0.018
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Frame = +3
Query: 420 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA-------TDAEGSADSAAII 578
+ E + +K EE A E +K E++ + ++ EEK S T GSA + I
Sbjct: 260 ELETEVEVVKAEETAEATEQAKVELEGKLEDVIVEEKDSEINSKDEKTSESGSALCSEEI 319
Query: 579 PNMVKKIDLAPNVESDAAAVPEIKTPEAA--DAPKLADNPVDEDKPAD 716
+ +++ + P E++ A I E A + + D P +E+KP++
Sbjct: 320 LSTIQESNTDPIKETEGDASYPIDVIEKAITEEKHVVDEPANEEKPSE 367
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 35.9 bits (79), Expect = 0.031
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Frame = +3
Query: 405 SSEIPDAEAKSADIKVEE-PAAQ-PEDSKTEVQATVAEISKEEKPSATDAEGSADSAAI- 575
S+E+ ++ A++ EE P+++ P+ + EV AT AE EK T+ +A A
Sbjct: 381 SAEVEESVCVPAEVTSEEVPSSETPKVVEEEVIATKAEDDSPEKEEQTETLAAAAEAEEV 440
Query: 576 ---IPNMVKKIDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDEDKPAD 716
IP + ++ N +A E+ +PEA + ++ V + P D
Sbjct: 441 VPPIPETKSEEEIVENSIPPNSATDEVSSPEALASEEVEKEQVVAETPVD 490
Score = 31.1 bits (67), Expect = 0.87
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Frame = +3
Query: 417 PDAEAKSADIKVEEPAAQPED--------SKT------EVQATVAEISKEEKPSATDA-E 551
P+AEA +VEE P + S+T EV AT AE EK T+
Sbjct: 373 PEAEASVTSAEVEESVCVPAEVTSEEVPSSETPKVVEEEVIATKAEDDSPEKEEQTETLA 432
Query: 552 GSADSAAIIPNM--------VKKIDLAPNVESDAAAVPEIKTPEAADAPK-LADNPVDED 704
+A++ ++P + + + + PN +D + PE E + + +A+ PVDE
Sbjct: 433 AAAEAEEVVPPIPETKSEEEIVENSIPPNSATDEVSSPEALASEEVEKEQVVAETPVDEV 492
Query: 705 K-PADI 719
K PA +
Sbjct: 493 KTPAPV 498
>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 34.3 bits (75), Expect = 0.094
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +3
Query: 411 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 590
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 591 KKIDLAPNVESDAAAVPE--IKTPEAADAPKLADNP 692
+++ + A AV E +K PE +A+ P
Sbjct: 188 PEVEEKKEEATPAPAVVETPVKEPETTTTAPVAEPP 223
>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
protein contains Pfam profile: PF05558 DREPP plasma
membrane polypeptide
Length = 225
Score = 34.3 bits (75), Expect = 0.094
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +3
Query: 411 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 590
E+ E ++K EEPA E +KTE T E KEE T +G A++
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTE--GTSGE--KEEIVEET-KKGETPETAVVEEKK 187
Query: 591 KKIDLAPNVESDAAAVPE--IKTPEAADAPKLADNP 692
+++ + A AV E +K PE +A+ P
Sbjct: 188 PEVEEKKEEATPAPAVVETPVKEPETTTTAPVAEPP 223
>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
(Alpha-tocopherol associated protein) (TAP) (bTAP)
(Fragment) (SP:P58875) {Bos taurus}
Length = 683
Score = 33.9 bits (74), Expect = 0.12
Identities = 30/99 (30%), Positives = 44/99 (44%)
Frame = +3
Query: 417 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKK 596
P E K + K EE + E+ KTE ++ AE +EEK SA A I+
Sbjct: 123 PVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEK-SAAPATVETKKEEILAAPAPI 181
Query: 597 IDLAPNVESDAAAVPEIKTPEAADAPKLADNPVDEDKPA 713
+ E+ A P ++T A AP +A+ +E PA
Sbjct: 182 VAETKKEETPVAPAP-VETKPA--APVVAETKKEEILPA 217
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 33.5 bits (73), Expect = 0.16
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Frame = +3
Query: 402 KSSEIPDAEAK-SADIKVEEPAAQPEDSKTEVQATVAE---ISKEEKPSATDAEGSADSA 569
K E E K SA I EE + +P S+ +V + S + KP+ ++ S
Sbjct: 456 KKKESSTEEVKPSASIATEEVSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSKKSTSET 515
Query: 570 AIIPNMVKKIDLAPNVESDAAAVPEIKTP---EAADAPKLADNPVDEDKPA 713
+ KK+ + N + E K P +A D L + D +KPA
Sbjct: 516 KVAKQSEKKVVGSDNAQESTKPKEEKKKPGRGKAIDEESLHTSSGDNEKPA 566
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 417 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 569
P A AK+ +K ++ ++ +DS +E + +K KP+A D+ S D +
Sbjct: 141 PAAAAKNGSVKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDS 191
>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 370
Score = 32.3 bits (70), Expect = 0.38
Identities = 40/135 (29%), Positives = 53/135 (39%)
Frame = +3
Query: 288 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAA 467
E+P +PE K + AP+ +I K E+P K +I+ E
Sbjct: 237 ELPKLPEVPKLE-APKVPEIQKPELPKMPELPKMPEIQKP-ELP----KMPEIQKPELPK 290
Query: 468 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEI 647
PE K E+ TV E+ K E P + IP V K +L E AVPEI
Sbjct: 291 VPEVPKPELP-TVPEVPKSEAPKFPEIP--KPELPKIPE-VPKPELPKVPEITKPAVPEI 346
Query: 648 KTPEAADAPKLADNP 692
PE P+L P
Sbjct: 347 PKPELPTMPQLPKLP 361
Score = 31.5 bits (68), Expect = 0.66
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 1/139 (0%)
Frame = +3
Query: 288 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEA-KSADIKVEEPA 464
E+P +PE K ++ P+ +I K +IP E K +I E
Sbjct: 66 ELPKLPEFPKPEL-PKIPEIPKPELPKVPEIPKPEE-TKLPDIPKLELPKFPEIPKPELP 123
Query: 465 AQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPE 644
PE K E+ V EI K E P + P + K DL E+ VP+
Sbjct: 124 KMPEIPKPELPK-VPEIQKPELPKMPEIP--KPELPKFPE-IPKPDLPKFPENSKPEVPK 179
Query: 645 IKTPEAADAPKLADNPVDE 701
+ E +APK+ + P E
Sbjct: 180 LMETEKPEAPKVPEIPKPE 198
Score = 29.5 bits (63), Expect = 2.7
Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 2/137 (1%)
Frame = +3
Query: 288 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEA-KSADIKVEEPA 464
E+P PE K ++ P+ +I K EIP E K +I +
Sbjct: 110 ELPKFPEIPKPEL-PKMPEIPKPELPKVPEIQKPELP-KMPEIPKPELPKFPEIPKPDLP 167
Query: 465 AQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNM-VKKIDLAPNVESDAAAVP 641
PE+SK EV + E K E P + IP + K+ P +E A VP
Sbjct: 168 KFPENSKPEVPKLM-ETEKPEAPKVPE----------IPKPELPKLPEVPKLE--APKVP 214
Query: 642 EIKTPEAADAPKLADNP 692
EI+ PE P+L P
Sbjct: 215 EIQKPELPKMPELPKMP 231
>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
SEC14-like protein 2 (Alpha-tocopherol associated
protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
taurus}; similar to GI:807956 from [Saccharomyces
cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
contains Pfam PF03765 : CRAL/TRIO, N-terminus
Length = 573
Score = 32.3 bits (70), Expect = 0.38
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +3
Query: 426 EAKSADIKVEE--PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKI 599
E + ++KVEE PA + + +A E EEKP AE + + A+
Sbjct: 145 EETTTEVKVEEEKPAVPAAEEEKSSEAAPVETKSEEKPE-EKAEVTTEKASSAEE----- 198
Query: 600 DLAPNVESDAAAVPEIKTPEAADAPKLADN-PVDEDKPAD 716
D VE+ ++ + PE+A AP + + V E +P +
Sbjct: 199 DGTKTVEAIEESIVSVSPPESAVAPVVVETVAVAEAEPVE 238
>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 342
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -2
Query: 223 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 119
+T+SS+ AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146
>At3g49990.1 68416.m05466 expressed protein
Length = 502
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 414 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 551
+P A+ D+K E P A+P KT Q + E K+E+ +A AE
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE--KKERKNAVKAE 465
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/88 (25%), Positives = 43/88 (48%)
Frame = +3
Query: 405 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 584
+ E+ EA+ D + E+ + +D KTEV + +EEK AE ++ A++
Sbjct: 57 NEEVVVEEAEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVEE 111
Query: 585 MVKKIDLAPNVESDAAAVPEIKTPEAAD 668
KK ++ +++ AA E+ +A +
Sbjct: 112 -EKKTEVVEEKQTEVAAAEEVAVEKAEE 138
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 411 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 590
E D + + +++VE+P+ + SK V+ + K+++PS A+GSA S +
Sbjct: 320 EKTDTDDEKDEVEVEKPSKKKSSSKKTVEESSGSKGKDKQPS---AKGSARSGEKSSKQI 376
Query: 591 KKIDLAP 611
K +P
Sbjct: 377 AKSTSSP 383
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +3
Query: 414 IPDAEAKSADIKVEEPAAQPEDSKT-EVQATVAEISKEEKPSATDAEGSADSAAIIPNMV 590
IPDA A D + P A PE S+ V A S DA ++ +IP+
Sbjct: 436 IPDAAAP-VDAGLISPRAAPEASRDGNVIPDAAAPVDAGLISLRDAPEASRDGNVIPDAA 494
Query: 591 KKIDLAPNVESDAAAVPEIKTPEAADAPKLAD 686
+D AP+ +A P + EA A ++D
Sbjct: 495 APVDAAPSEAQEAE--PSVAASEAVVALPVSD 524
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Frame = +3
Query: 432 KSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPS-ATDAEGSADSAAIIPNMVKKIDLA 608
K K E+P +PE K E A ++ KP + + S+ P K +
Sbjct: 469 KQESPKTEQPKPKPESPKQESPKQEAPKPEQPKPKPESPKQESSKQEPPKPEESPKPEPP 528
Query: 609 PNVESDAAAVPEIKTPEAADAPKLADNPVDEDKPAD 716
ES P+ +TP+ ++PK + KP +
Sbjct: 529 KPEESPKPQPPKQETPKPEESPKPQPPKQETPKPEE 564
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +3
Query: 288 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKV-EEPA 464
E P + E KKD+ AP ++ + K E+ + + + A + V EE
Sbjct: 73 ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKK 129
Query: 465 AQPEDSKTEVQATV-AEISKEEK 530
+ E+ K V+A+V A + K ++
Sbjct: 130 PEAEEEKPAVEASVTAPVEKADE 152
>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
(CPK2) identical to calcium-dependent protein kinase
isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 646
Score = 27.1 bits (57), Expect(2) = 3.1
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 411 EIPDAEAKSADIKVEEPAAQPED-SKTEVQATVAEISKEEKPSATDAE 551
E+P E+K ++ V+ +A+PE S+++ + T E + E KP T AE
Sbjct: 109 EVPPEESKR-EVVVQPESAKPETKSESKPETTKPETTSETKPE-TKAE 154
Score = 20.6 bits (41), Expect(2) = 3.1
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +3
Query: 300 IPEAKKDDIAPEDS 341
+PE K ++ PE+S
Sbjct: 102 VPEESKQEVPPEES 115
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +3
Query: 447 KVEEPAAQPEDSKTE-VQATVAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPNV 617
K E + P+ + + V E SK+ K + + +A A ++P+ I AP+V
Sbjct: 344 KPSESTSHPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSV 403
Query: 618 ESDAAAVPEIKTP 656
+ +A KTP
Sbjct: 404 TQEDSAFNTEKTP 416
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +3
Query: 447 KVEEPAAQPEDSKTE-VQATVAEISKEEKPSATDAEG--SADSAAIIPNMVKKIDLAPNV 617
K E + P+ + + V E SK+ K + + +A A ++P+ I AP+V
Sbjct: 605 KPSESTSHPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDSTITAAPSV 664
Query: 618 ESDAAAVPEIKTP 656
+ +A KTP
Sbjct: 665 TQEDSAFNTEKTP 677
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = +3
Query: 402 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 581
K+ E E + D + E+ + +D KTEV + +EEK AE ++ A++
Sbjct: 22 KTVEETVVETEKKDEETEKKTEE-KDEKTEVITETPVVEEEEK----KAEEVTETPAVVE 76
Query: 582 NMVKKIDLAPNVESDAAAVPEIKTPEAAD 668
KK ++ +++ AA E+ +A +
Sbjct: 77 E-EKKTEVVEEKQTEVAAAEEVAVEKAEE 104
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 285 DEVPAIPEAKKDDIAPE 335
D+ +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +3
Query: 399 AKSSEIPDAEAKSADIKVEEPAAQPED-------SKTEVQATVAEISKEEKPSATDAEGS 557
A E P AE ++ VEE AAQPE + E + A K++K + E
Sbjct: 308 AALGETPAAERPASSTPVEEKAAQPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKK 367
Query: 558 ADSAAIIPNMVK 593
A +AA + V+
Sbjct: 368 AAAAAAATSSVE 379
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 28.3 bits (60), Expect = 6.1
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Frame = +3
Query: 399 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQ------ATVAEISKEEKPSATDAEGSA 560
A SS+ E K K EE ++Q E + E + ++ E SKEE+P + E S+
Sbjct: 322 ASSSQDESKEEKPERKKKEESSSQGEGKEEEPEKREKEDSSSQEESKEEEPENKEKEASS 381
Query: 561 DSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPE 659
N +K+ ++ ES + E K E
Sbjct: 382 SQE---ENEIKETEIKEKEESSSQEGNENKETE 411
>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 793
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 421 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKKKNL 534
M K+N+ + K+K ++L LK K YK + K Q + L
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777
>At2g02170.1 68415.m00153 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 486
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 420 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 569
+AE K ++KVE + +D + AT+ E EEK +A +A+ +A
Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKLATI-ERKAEEKRAAAEAKKDHQAA 459
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,929,032
Number of Sequences: 28952
Number of extensions: 191971
Number of successful extensions: 657
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -