Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0357
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0005 + 34977-35516,35620-35777,35889-37192,37532-37626,387...    33   0.17 
11_01_0006 + 36564-37103,37207-37364,37476-38779,39119-39213,403...    33   0.17 
11_06_0545 + 24839536-24843421,24843871-24844310                       33   0.30 
05_03_0533 + 15117535-15118248                                         31   0.70 
04_03_0653 - 18429736-18431379                                         31   1.2  
06_03_0284 - 19155236-19155400,19155831-19156046,19158387-19158596     30   2.1  
02_03_0367 + 18220099-18220905                                         30   2.1  
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    28   8.6  

>12_01_0005 +
           34977-35516,35620-35777,35889-37192,37532-37626,
           38738-38816,38938-38954
          Length = 730

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 528 IEQRTRSAQAAAQ--GTQRNSSSLRRVPTAPLRADDTLTSNSHHCSHKVGREMGADACPQ 701
           IE+   S   A +  GT+ +  +L    TAPL +DD+L   +  CS ++      + CP 
Sbjct: 426 IEKHVESLHDAMELDGTESSKMNLIADFTAPLSSDDSLVCYAIPCSMELSDTSVVNKCPH 485

Query: 702 AEAGMP 719
              G P
Sbjct: 486 QSTGFP 491


>11_01_0006 +
           36564-37103,37207-37364,37476-38779,39119-39213,
           40324-40402,40524-40540
          Length = 730

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 528 IEQRTRSAQAAAQ--GTQRNSSSLRRVPTAPLRADDTLTSNSHHCSHKVGREMGADACPQ 701
           IE+   S   A +  GT+ +  +L    TAPL +DD+L   +  CS ++      + CP 
Sbjct: 426 IEKHVESLHDAMELDGTESSKMNLIADFTAPLSSDDSLVCYAIPCSMELSDTSVVNKCPH 485

Query: 702 AEAGMP 719
              G P
Sbjct: 486 QSTGFP 491


>11_06_0545 + 24839536-24843421,24843871-24844310
          Length = 1441

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +3

Query: 474 AREVAIEPAHYTREHAASIEQRTRSAQAAAQGTQRNSSSLRRVPTAPLRADDTLTSNSHH 653
           A+E A++P+   +EH   I Q  + A   +  ++ + S+ +R+P A +   +   ++S  
Sbjct: 301 AKEAAVDPSGKAKEHKRWITQGEKKAADTSTSSEVHDSAEKRMPLADVNPSEMAEASSAD 360

Query: 654 CSHKVGRE 677
             H    E
Sbjct: 361 DGHNKATE 368


>05_03_0533 + 15117535-15118248
          Length = 237

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
 Frame = -3

Query: 560 SCLRAPRPLLYTCGMLACVVRGLDGYFSCCATLPPLRSASLRRS*CFQIRVSA-ELSSRT 384
           S  R   P    CG+LA   R L   F     +P   + S+R      +R +A ++S R 
Sbjct: 5   SSTRPLAPSCVACGLLAPCRRALARLFR----IPASAALSVRAFRFRTLRRAASKMSPRR 60

Query: 383 LRHARAVPRLTFRAPR-TFWSCATLPPNYSPQFSRDHERAYKVRRRSM 243
            RH R   R TFR+ R  FW     P   +   +   E A     RS+
Sbjct: 61  HRHCRHPRRRTFRSVRAVFWPLVPPPATTTASSTDQGESAAGATARSV 108


>04_03_0653 - 18429736-18431379
          Length = 547

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +3

Query: 540 TRSAQAAAQGTQRNSSSLRRVPTAPLRADDTLTSNSHHCSHKVGREMGADA 692
           TR+A AAA  ++R     R +P       D L    H C    G   GADA
Sbjct: 53  TRTALAAAALSRRLDRLAREIPALVFSVRDVLPPRYHACVRAHGDAAGADA 103


>06_03_0284 - 19155236-19155400,19155831-19156046,19158387-19158596
          Length = 196

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 626 IGSERCGGNAAKRAAVPLRPLGSCLRA-PRPLLYTCGMLACVVRG 495
           IGS +C    AK    PL+ + S +R   +P +Y   +  CV+RG
Sbjct: 51  IGSNQCNSFIAKHVRAPLQNVWSLVRRFDQPQIYKPFVRKCVMRG 95


>02_03_0367 + 18220099-18220905
          Length = 268

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 456 RW*CSAAREVAIEPAHYTREHAASIEQRTRSAQAAAQGTQRNSSSLRRVPTAP 614
           RW CS +RE+  +      +H A+ E    SA  ++  ++R     RR P  P
Sbjct: 108 RWDCSPSRELIHDAIEAFEDHLAAAES---SAPPSSSSSKRRDKGKRRPPPPP 157


>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
            18238033-18238041,18238096-18238248
          Length = 1465

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 261  FISALVIARKLWTVIRRQSRAAPESARC 344
            F + LV  R+ WT  R +SR  P   RC
Sbjct: 1246 FFAWLVAKRRCWTADRLRSRGLPHPDRC 1273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,649,730
Number of Sequences: 37544
Number of extensions: 373801
Number of successful extensions: 1274
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)