Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0357
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 31   0.71 
SB_51045| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7)                     30   2.2  
SB_39054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
 Frame = +3

Query: 423 TL*TPQ*SGSQRW*CSAAREVAIEPAHYTREHAASIEQRTRSAQAAAQGTQRNSSSLRRV 602
           TL  P+ S SQR   SA R      +      + S  QRT  + + AQGT ++ SS +R 
Sbjct: 443 TLAVPR-SSSQRTPRSAQRTPRSGSSAQRTPRSGSSVQRTPRSGSLAQGTPKSGSSAQRT 501

Query: 603 P-------TAPLRADDTLTSNSHHCSHKVG 671
           P       T PL       +    CS K G
Sbjct: 502 PSSGSSAHTTPLHGTVLQINRRRRCSAKSG 531


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -3

Query: 410 VSAELSSRTLRHARAVPRLTFRAPRTFWSCATLPPNYSPQFSRDHERA 267
           V ++ SSR+  ++R+  R   R+P   WS  +  P+ SPQ SR + R+
Sbjct: 409 VGSDASSRSRSYSRSASRSYSRSPVRSWS-RSHSPSLSPQRSRSYSRS 455


>SB_51045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 338 RTFWSCATLPPNYSPQFSRDHERAYKVRRRSMNLR 234
           RT WS +TLP   S    R  E A+  RR    LR
Sbjct: 260 RTSWSTSTLPTTTSENAGRPSETAFTKRRTDRRLR 294


>SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7)
          Length = 357

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 512 RACRKYRAEDAERASSCPGDAAEQQLASPRSHRTAPSR*HADVEQP 649
           R  R  R + A   +SC     + QL  PRSH+  P       +QP
Sbjct: 298 RRARPLRLDQASSGASCLPKRHQLQLQQPRSHQPQPRSHQPQPQQP 343


>SB_39054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 803

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 495 ARWLLLVLRYTTTSEIRFTAAFIMFSNPSQR*TLIADTAARPCGTAVNFSRT 340
           +RW  + L +TTTS     A   +F+  S   T+I+D   +    +++F RT
Sbjct: 577 SRWFEIKLLHTTTSGAVIRALSEIFATHSIPDTIISDNGPQHAKNSLSFRRT 628


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,674,660
Number of Sequences: 59808
Number of extensions: 386589
Number of successful extensions: 1082
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)