Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0357
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical...    31   1.1  
AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical...    29   3.3  
Z69634-4|CAA93455.2|  674|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z66513-1|CAA91329.3|  426|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical
           protein C18E3.9a protein.
          Length = 298

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 477 REVAIEPAHYTREHAASIE--QRTRSAQAAAQGTQRNSSSLRRVPTAPLRADDTLTSNSH 650
           R V  EP   + +H +S E  Q+     +  + T + S+S    PT  L      +SN  
Sbjct: 168 RWVISEPDDNSDKHVSSSENHQQREKIISPTEKTLQKSTSSNSSPTLKLFVTVPSSSNQE 227

Query: 651 HCSHKVGREMGADACPQAEAGM 716
              HK G  +    CP A  G+
Sbjct: 228 CILHKYGHCIAPQICPFAHDGV 249


>AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.2 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -3

Query: 107 RDPGRVVRRLIGRGESWPGS---EPRGDCETQTNKC 9
           RDPG  +R  I  G+  PG+    P G C  + N C
Sbjct: 134 RDPGTAIRAPIFPGQRDPGTAIRAPTGSCRVKCNHC 169


>Z69634-4|CAA93455.2|  674|Caenorhabditis elegans Hypothetical
           protein B0001.6 protein.
          Length = 674

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 594 RRVPTAPLRADDTLTSNSHHCSHKVG 671
           RR+PT PL A+D L   SH  S   G
Sbjct: 475 RRLPTPPLEANDNLEHQSHDSSSTDG 500


>Z66513-1|CAA91329.3|  426|Caenorhabditis elegans Hypothetical
           protein F54D5.2 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 491 DGYFSCCATLPPLRSASLRRS*CFQIRVSAELS 393
           D Y S C T PPL  +   R  C ++R S  LS
Sbjct: 45  DEYKSECRTFPPLYKSLFDRQKCGKVRFSPPLS 77


>Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.5 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 265 IKFVGDQ*TFA*FKYINIYSIIVVRIRYEF*YVW*RYRHGGEIEVRDEES 116
           IKF+  Q T A FKY ++  +I+V     +        H G+++V  EE+
Sbjct: 156 IKFLSSQDTIAIFKYSHLMYLILVTAMRSYLCKEAAMNHPGKVDVFPEEA 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,292
Number of Sequences: 27780
Number of extensions: 274518
Number of successful extensions: 761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)