Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0357
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.72 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.9  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   6.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   6.7  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   6.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 188 NSYNNNTVYIYVFKSGEGSLIADELYKRARDRAKIVD 298
           N+YN+N  Y Y   +G  S  +D L+K+ ++  + ++
Sbjct: 136 NNYNDN--YFYSKSNGSNSSNSDVLFKQNKEEEQTIN 170


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 170 ISKFISNSYNNNTVYIYVFKSGEGSLI 250
           + KFI+N YN N V   +  +    LI
Sbjct: 552 LQKFINNDYNFNEVNFRILGANVNDLI 578


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 261 FISALVIARKLWTVIRRQSRAAPESARCAK 350
           F+S ++I     T +   +  APE+A CA+
Sbjct: 11  FLSVILITSYFVTPVMPCNCKAPETALCAR 40


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 690 RQPPFLDQLYASNGGCS 640
           RQP  ++Q  A NG CS
Sbjct: 28  RQPDGMNQCQAVNGHCS 44


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 690 RQPPFLDQLYASNGGCS 640
           RQP  ++Q  A NG CS
Sbjct: 28  RQPDGMNQCQAVNGHCS 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,910
Number of Sequences: 438
Number of extensions: 3688
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)