Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0355
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 225 3e-59
07_01_0578 + 4295386-4296489,4297394-4297507 222 2e-58
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.12
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.16
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.21
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 32 0.37
08_02_1278 - 25838146-25839411 32 0.49
03_05_0366 - 23505755-23506441 31 0.86
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444... 30 1.5
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 30 2.0
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 2.6
04_01_0588 + 7657510-7657992,7658397-7658843 29 4.6
03_05_0452 + 24464134-24464442 29 4.6
02_04_0457 + 23093020-23093343,23093798-23093806 29 4.6
10_07_0029 + 12031711-12032464,12044289-12044386 28 6.0
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 28 6.0
07_03_1387 + 26202975-26203274,26203363-26203449,26203541-262036... 28 6.0
07_01_0469 - 3552409-3553368 28 8.0
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 28 8.0
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563... 28 8.0
04_01_0244 - 3194141-3195091,3195301-3195312 28 8.0
03_01_0147 - 1170481-1171260,1171332-1171511 28 8.0
03_01_0092 - 731069-731434,731569-733080 28 8.0
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 225 bits (550), Expect = 3e-59
Identities = 112/203 (55%), Positives = 133/203 (65%), Gaps = 1/203 (0%)
Frame = +2
Query: 77 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 253
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 254 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 433
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 434 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 613
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYAD 182
Query: 614 ILKVYKSQRLRAGKGKMRNRRRI 682
K S +RAGKGKMRNRR I
Sbjct: 183 AEKTKDSVAIRAGKGKMRNRRYI 205
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 222 bits (543), Expect = 2e-58
Identities = 110/201 (54%), Positives = 134/201 (66%), Gaps = 2/201 (0%)
Frame = +2
Query: 86 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 259
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 260 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 439
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 440 XXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 619
ARGH IE +PELPLV++D + I KT QA+ L+++ A++D
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAE 185
Query: 620 KVYKSQRLRAGKGKMRNRRRI 682
K S +R GKGKMRNRR I
Sbjct: 186 KAKDSVGIRPGKGKMRNRRYI 206
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 266 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 376
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 372 PPRHMLPKAP*PDLWVPPP 316
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 204
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 204
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -3
Query: 595 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 488
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.86
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 152 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 328
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 329 HRSGQGA 349
+ + + A
Sbjct: 168 NDNDEEA 174
>03_05_1062 -
30043596-30043811,30044083-30044178,30044387-30044448,
30044990-30045023,30045220-30046173
Length = 453
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -3
Query: 586 EDDSLFGLVDLLDFVGYN--QGKLGNLFNNVSSSLNERWDASSSNGCCQGR 440
+DD +F V LLD VGYN +G++ N SL + W S CCQG+
Sbjct: 331 DDDVVFLHVKLLDLVGYNFISRTVGSILIN---SLLDAWH-SCVYICCQGK 377
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 204
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 49 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 204
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 188 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 358
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 359 MCRGGRMFAPTKPWRRW 409
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>03_05_0452 + 24464134-24464442
Length = 102
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 208 VQELEAALLREQGGWSPNQCRIMGYRTCCCPNSA 309
V+++ ++LLR G Q ++G R C C NSA
Sbjct: 21 VEKVRSSLLRVLGLLRGGQASMLGKRACFCSNSA 54
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 251 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 355
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 377 YVHHDTCYRRHPDRTYG 327
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRYHPRRANG 110
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 28.3 bits (60), Expect = 6.0
Identities = 30/89 (33%), Positives = 38/89 (42%)
Frame = -3
Query: 655 LTSTKTLRLVHFKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSLNERW 476
L S TLR VH + QE + L L L VG N+ K G F + S L++
Sbjct: 947 LKSLHTLRHVHLAWGNTVI---QEIERLTQLRKL-GVVGINK-KNGPSFYSAISKLSQLE 1001
Query: 475 DASSSNGCCQGRSPLSEVDATVPAPPGLR 389
S G CQG S +T P P L+
Sbjct: 1002 SLSVCAGWCQGLHGTSSSSSTSPPPENLQ 1030
>07_03_1387 +
26202975-26203274,26203363-26203449,26203541-26203648,
26203708-26203980,26205242-26205355,26205900-26206268
Length = 416
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 405 AGTVASTSDSGERPWQQPLLLLASQRSFRLEDTLLKRFPSFPWL*PTKSRRSTRPNRLSS 584
A AST+ G RPW ++++R + R P+ W + RR+ R + +++
Sbjct: 8 AAAAASTARGGHRPWTAASRGVSARRCSVAPAQVRARGPTEWWPAAARRRRAPRRHAVAA 67
Query: 585 S*GAS 599
GA+
Sbjct: 68 KAGAA 72
>07_01_0469 - 3552409-3553368
Length = 319
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 377 YVHHDTCYRRHPDRTYG 327
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRFHPRRASG 110
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 353 RRHPDRTYGYHHHGHAEFGQQHVRYPMI 270
R H D +G+HHH H G H P +
Sbjct: 68 RAHGDHHHGHHHHHHGH-GHSHHHGPEV 94
>05_05_0285 -
23855219-23855371,23855391-23856063,23856239-23856301,
23856478-23856604,23856751-23856897,23856968-23856974,
23857203-23857379
Length = 448
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 397 LAALAPSRQPPTAESGLGSSRCCYWRPSARS 489
+A AP AESG+G+ C +WR S S
Sbjct: 306 IAKDAPPAVEVKAESGVGTLGCAFWRTSLGS 336
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 377 YVHHDTCYRRHPDRTYG 327
Y+ HDT YR HP R G
Sbjct: 98 YIFHDTAYRFHPRRANG 114
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 43 GIASLK*R-NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 204
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 369 PRHMLPKAP*PDLWVPPPRTRGIRATARPVP 277
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,047,865
Number of Sequences: 37544
Number of extensions: 463502
Number of successful extensions: 1770
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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