Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0355
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               246   1e-65
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     34   0.12 
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   2.7  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.5  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.5  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   6.2  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   6.2  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              28   8.1  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  246 bits (602), Expect = 1e-65
 Identities = 116/200 (58%), Positives = 141/200 (70%)
 Frame = +2

Query: 83  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 262
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 263 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 442
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH          
Sbjct: 60  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRF 119

Query: 443 XXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 622
                           ARGH IEKI E+PLV++D ++ + KT  AV  L+ + A+ D+ K
Sbjct: 120 AVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEK 179

Query: 623 VYKSQRLRAGKGKMRNRRRI 682
              S+++RAGKGKMRNRR +
Sbjct: 180 CIDSKKIRAGKGKMRNRRTV 199


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 371 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWF 258
           HH  CY  H    Y Y+ H H  + + H  YP  RH++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 356 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQ 249
           Y +HP  T+ YHH  H +   ++ ++P + H +  Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 356 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 243
           Y +HP  T+ YH H      + H ++P + H +  Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 330 WVPPPRTRGIRATARPVPHD 271
           W+PP RTR  R T  PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 371 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 279
           HH     RH  R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 380 TYVHHDTCYRRHPDRTYGYHHHGHA 306
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 260  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 376
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 179  DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 304
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 278 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 406
           G GR + R P   GGG  R   G +G M  GG    P   W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 150  GRGLAAPCTVSLFSEYTDTKGRATDRLI 67
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 173 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 295
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 275 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 406
           WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 24  WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,632,004
Number of Sequences: 59808
Number of extensions: 470499
Number of successful extensions: 1506
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)