Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0355
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 239 2e-63
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 0.77
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 9.5
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 27 9.5
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 27 9.5
U42439-8|AAM98032.1| 431|Caenorhabditis elegans Hypothetical pr... 27 9.5
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 9.5
AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever sho... 27 9.5
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 27 9.5
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 27 9.5
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 239 bits (584), Expect = 2e-63
Identities = 116/201 (57%), Positives = 140/201 (69%)
Frame = +2
Query: 83 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 262
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 263 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 442
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121
Query: 443 XXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 622
QARGH+I+++ E+PLVV+DKV+ KTK+AV+FLRR W+DI K
Sbjct: 122 AVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEK 181
Query: 623 VYKSQRLRAGKGKMRNRRRIQ 685
VY S+R RAGKGK+RNR+ Q
Sbjct: 182 VYNSKRNRAGKGKLRNRQHKQ 202
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 31.1 bits (67), Expect = 0.77
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +2
Query: 215 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 385
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 386 PTKP 397
KP
Sbjct: 197 APKP 200
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 685 LDTTTVAHFTLTSTKTLRLVHFKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 533
L+ +VA L TKT+RL+ IRP + + L + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 541 GYNQGKLGNL-FNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAP 401
GY G + N+ N VS+ + + ++AS+S G G S +E+D P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 131 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 30
P S +S N PT+K+ L I+ YF PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +1
Query: 253 SPNQC--RIMGYRTCCCPNSAC 312
S N+C + G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +1
Query: 253 SPNQC--RIMGYRTCCCPNSAC 312
S N+C + G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887
>U42439-8|AAM98032.1| 431|Caenorhabditis elegans Hypothetical
protein F19C7.8a protein.
Length = 431
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 335 TYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 243
T+GYHH+ HA Q + + R PP
Sbjct: 67 THGYHHNPHARLSQPDIHSAIYRPHHYYSPP 97
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 371 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 288
HHD +++H + + HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform b protein.
Length = 461
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 86 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 259
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 260 TSAESWGTGRAVARIPRVRGGGTHRSGQG 346
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 86 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 259
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 260 TSAESWGTGRAVARIPRVRGGGTHRSGQG 346
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 86 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 259
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 260 TSAESWGTGRAVARIPRVRGGGTHRSGQG 346
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,552,930
Number of Sequences: 27780
Number of extensions: 331939
Number of successful extensions: 1104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -