Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0355
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   229   1e-60
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   227   4e-60
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    31   0.72 
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    30   1.3  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    30   1.3  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   2.2  
At1g18670.1 68414.m02330 protein kinase family protein contains ...    29   2.9  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   5.0  
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s...    28   5.0  
At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid t...    28   6.7  
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    27   8.8  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  229 bits (561), Expect = 1e-60
 Identities = 112/207 (54%), Positives = 136/207 (65%), Gaps = 2/207 (0%)
 Frame = +2

Query: 68  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 241
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 242 KEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXX 421
           K+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH   
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120

Query: 422 XXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLK 601
                                  ARGH IE +PE+PLVV+D  + + KT  A+  L+++ 
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180

Query: 602 AWSDILKVYKSQRLRAGKGKMRNRRRI 682
           A+ D  K   S  +R GKGKMRNRR I
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYI 207


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  227 bits (556), Expect = 4e-60
 Identities = 112/204 (54%), Positives = 132/204 (64%), Gaps = 2/204 (0%)
 Frame = +2

Query: 77  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 250
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 251 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 430
           GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH      
Sbjct: 65  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVN 124

Query: 431 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWS 610
                               ARGH IE +PE+PLVV+D  + + KT  A+  L+++ A+ 
Sbjct: 125 MKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYD 184

Query: 611 DILKVYKSQRLRAGKGKMRNRRRI 682
           D  K   S  +R GKGKMRNRR I
Sbjct: 185 DAEKAKNSIGIRPGKGKMRNRRYI 208


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 371 HHDTCYRRHPDRTYGYHHHGHAEF 300
           HH   Y  H    YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +1

Query: 367 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCCYWRPSARSG*RTHY*KDSRASLGCSRQ 546
           WW +V     LA+ APS   P  +  L  SR C   P ++S  + H   D+       R 
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLCP-SPLSQSSKQHHIRLDNHFDTSTPRS 523

Query: 547 S 549
           S
Sbjct: 524 S 524


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +1

Query: 367 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCCYWRPSARSG*RTHY*KDSRASLGCSRQ 546
           WW +V     LA+ APS   P  +  L  SR C   P ++S  + H   D+       R 
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLCP-SPLSQSSKQHHIRLDNHFDTSTPRS 522

Query: 547 S 549
           S
Sbjct: 523 S 523


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +2

Query: 92  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 238
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At1g18670.1 68414.m02330 protein kinase family protein contains
           Protein kinases ATP-binding region signature,
           PROSITE:PS00107 and Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 662

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 484 RSG*RTHY*KDSRASLGCSRQSPGDQQDQTGCHLPEAPQGMV*YP*SVQVSTSS 645
           R+G   H   DS ++L    Q P + +     H+  A QG V +   +QVS SS
Sbjct: 491 RNGHSVHNSIDSDSTLFEKMQKPSNHEKDEASHVKNASQGDVPFSGPLQVSVSS 544


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 143 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 238
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 143 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 238
           P+PF  K+P +PD++   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 573 CLVLLISWTLSATTKGSSGIFS 508
           CLVLL+S   +A TK  SGIF+
Sbjct: 9   CLVLLVSILRAAVTKPDSGIFT 30


>At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 161

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -3

Query: 526 KLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPPGLR 389
           KLG   N +SS LN +    SS  CC     L +VDA +     LR
Sbjct: 84  KLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALR 129


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +2

Query: 236 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAPTKPW 400
           + +  G + +AE   + + + ++P   G G    G+   G FGN   GG  F     W
Sbjct: 81  IRRRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGDISKW 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,002,435
Number of Sequences: 28952
Number of extensions: 323993
Number of successful extensions: 1164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)