Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0353
         (763 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U90278-1|AAB49993.1| 1484|Homo sapiens N-methyl-D-aspartate rece...    31   3.4  
U88963-1|AAD00659.1| 1484|Homo sapiens N-methyl-D-aspartate rece...    31   3.4  
BC113620-1|AAI13621.1| 1484|Homo sapiens glutamate receptor, ion...    31   3.4  
BC113618-1|AAI13619.1| 1484|Homo sapiens glutamate receptor, ion...    31   3.4  
AB208850-1|BAD92087.1| 1136|Homo sapiens Glutamate [NMDA] recept...    31   3.4  
U11287-1|AAB60368.1| 1484|Homo sapiens N-methyl-D-aspartate rece...    31   5.9  

>U90278-1|AAB49993.1| 1484|Homo sapiens N-methyl-D-aspartate receptor
            2B subunit precursor protein.
          Length = 1484

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
 Frame = +2

Query: 359  RYIN*SKLLSQVSGVNVSPKNTGD--TRIVINYD---YYN*FKHSTFKSFRYCGCDSMIN 523
            R +  +K ++ +SGVN SP++  D   R    YD   +   F HS  KS+    C+  + 
Sbjct: 900  RLLRTAKNMANLSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLF 959

Query: 524  VDFDEATHSITRSCKLD*S*MYRT*YSIRQKPYTIRSIS 640
             D+         + +L  S +Y+  Y    +P++I S S
Sbjct: 960  SDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHSIGSAS 998


>U88963-1|AAD00659.1| 1484|Homo sapiens N-methyl-D-aspartate receptor
            subunit 2B protein.
          Length = 1484

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
 Frame = +2

Query: 359  RYIN*SKLLSQVSGVNVSPKNTGD--TRIVINYD---YYN*FKHSTFKSFRYCGCDSMIN 523
            R +  +K ++ +SGVN SP++  D   R    YD   +   F HS  KS+    C+  + 
Sbjct: 900  RLLRTAKNMANLSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLF 959

Query: 524  VDFDEATHSITRSCKLD*S*MYRT*YSIRQKPYTIRSIS 640
             D+         + +L  S +Y+  Y    +P++I S S
Sbjct: 960  SDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHSIGSAS 998


>BC113620-1|AAI13621.1| 1484|Homo sapiens glutamate receptor,
            ionotropic, N-methyl D-aspartate 2B protein.
          Length = 1484

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
 Frame = +2

Query: 359  RYIN*SKLLSQVSGVNVSPKNTGD--TRIVINYD---YYN*FKHSTFKSFRYCGCDSMIN 523
            R +  +K ++ +SGVN SP++  D   R    YD   +   F HS  KS+    C+  + 
Sbjct: 900  RLLRTAKNMANLSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLF 959

Query: 524  VDFDEATHSITRSCKLD*S*MYRT*YSIRQKPYTIRSIS 640
             D+         + +L  S +Y+  Y    +P++I S S
Sbjct: 960  SDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHSIGSAS 998


>BC113618-1|AAI13619.1| 1484|Homo sapiens glutamate receptor,
            ionotropic, N-methyl D-aspartate 2B protein.
          Length = 1484

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
 Frame = +2

Query: 359  RYIN*SKLLSQVSGVNVSPKNTGD--TRIVINYD---YYN*FKHSTFKSFRYCGCDSMIN 523
            R +  +K ++ +SGVN SP++  D   R    YD   +   F HS  KS+    C+  + 
Sbjct: 900  RLLRTAKNMANLSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLF 959

Query: 524  VDFDEATHSITRSCKLD*S*MYRT*YSIRQKPYTIRSIS 640
             D+         + +L  S +Y+  Y    +P++I S S
Sbjct: 960  SDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHSIGSAS 998


>AB208850-1|BAD92087.1| 1136|Homo sapiens Glutamate [NMDA] receptor
           subunit epsilon 2 precursor variant protein.
          Length = 1136

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
 Frame = +2

Query: 359 RYIN*SKLLSQVSGVNVSPKNTGD--TRIVINYD---YYN*FKHSTFKSFRYCGCDSMIN 523
           R +  +K ++ +SGVN SP++  D   R    YD   +   F HS  KS+    C+  + 
Sbjct: 552 RLLRTAKNMANLSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLF 611

Query: 524 VDFDEATHSITRSCKLD*S*MYRT*YSIRQKPYTIRSIS 640
            D+         + +L  S +Y+  Y    +P++I S S
Sbjct: 612 SDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHSIGSAS 650


>U11287-1|AAB60368.1| 1484|Homo sapiens N-methyl-D-aspartate receptor
            subunit NR3 protein.
          Length = 1484

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
 Frame = +2

Query: 359  RYIN*SKLLSQVSGVNVSPKNTGD--TRIVINYD---YYN*FKHSTFKSFRYCGCDSMIN 523
            R +  +K ++ +SGVN SP+   D   R    YD   +   F HS  KS+    C+  + 
Sbjct: 900  RLLRTAKNMANLSGVNGSPQRPLDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLF 959

Query: 524  VDFDEATHSITRSCKLD*S*MYRT*YSIRQKPYTIRSIS 640
             D+         + +L  S +Y+  Y    +P++I S S
Sbjct: 960  SDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHSIGSAS 998


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,962,035
Number of Sequences: 237096
Number of extensions: 1694875
Number of successful extensions: 7837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7829
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)