Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0351
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = -1

Query: 152 TPGQSGSPCDCQ---SPHLPSGCRRRWISPRRYHP 57
           TP     P + Q     H P+G  + WI+  RY P
Sbjct: 777 TPFDPDVPIELQIQKQSHTPNGIVKTWIAHDRYLP 811


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 413 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 520
           +D ++VGG      V   L +  N K L     PDE
Sbjct: 69  YDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDE 104


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 606 NTPFPRY*DCWKCHDHTHQA*HYH 677
           +TP P +      H H H   H+H
Sbjct: 410 STPGPHHHTMGHGHSHIHATPHHH 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,879
Number of Sequences: 438
Number of extensions: 4782
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)