Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0350
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   4.8  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   4.8  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.8  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.4  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    25   8.4  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    25   8.4  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   8.4  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    25   8.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 252  IPLPAIQVPDNILYNTAPPSQIPLPADITQAPPGPVKS 365
            +PLP+   P   + +TAPP  +P+P   T  PP P  S
Sbjct: 1024 VPLPSADAPPIPVPSTAPP--VPIP---TSTPPVPKSS 1056



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 234  SVQLDDIPLPAIQVPDNILYNTAPPSQIPLPADITQAPPGPVKS 365
            SV    +P P++ VP     + APP  +P P+    APP PV S
Sbjct: 1098 SVAAPPVPKPSVAVPPVPAPSGAPP--VPKPS--VAAPPVPVPS 1137



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +3

Query: 252  IPLPAIQVPDNILYNTAPPSQI------PLPADITQAPPGPVKS 365
            +P P++ VP     +TAPP         P+P    +APP P  S
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 129 KDEPEKWVDLKRQEMEYEKRRAHLISYYESVKHAQSVQLDDIPLPAIQVPD 281
           K E  K  D++RQE +YE     L +  E  +  Q V L   P+ AI V D
Sbjct: 421 KAEDVKKQDIERQERDYE---LFLQNLEEDPELRQGVNLYKAPVKAIAVAD 468


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +1

Query: 61  KSIERAKEKNSRKLLTESSKCMTKMSQ---RNG*ISNVKKWNMKRGEPI*FHITNQ*SML 231
           K ++ A+  ++ K   ++S+   K+S    +N  +S+  K+N K   PI   + N+ S+ 
Sbjct: 198 KELQAARASSAAKPPPKASQKNEKVSLTSIKNTSLSHFSKFNFKYALPIHMSLENRRSLE 257

Query: 232 NLF 240
           NLF
Sbjct: 258 NLF 260


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = -1

Query: 161 FEIYPFLW-LIFVIHFEDSVK--SFLEFFSFALSI 66
           F+IYPF++ + F+++F    K  +F+E F   LSI
Sbjct: 595 FKIYPFMYGIAFLVYFSKPKKGSTFMEKFLSLLSI 629


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 210 YESVKHAQSVQLDDIPLPAIQVPDNILYNTAPPSQIPLPAD 332
           YE VK   ++  + +P      P N   ++A PS+IP+P +
Sbjct: 356 YEPVKRQDTLASNHVP----SAPSNESVSSAAPSKIPVPEE 392


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 300 APPSQIPLPADITQAPPGPVKS 365
           APP+  P PA     PP PV+S
Sbjct: 730 APPTPAPTPAVKHHPPPPPVRS 751


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 303  PPSQIPLPADITQAPPGPV 359
            PPS  P+PA    APP P+
Sbjct: 1717 PPSAPPMPAGPPSAPPPPL 1735


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 222 KHAQSVQLDD-IPLPAIQVPDNILYNTAPPSQIPLPADITQAPP 350
           +  +SVQ D+ + +  ++    IL+ T    Q P+P+     PP
Sbjct: 79  EEVKSVQTDEKLQIKVLRYVSQILHTTVSEEQYPVPSRFVIYPP 122


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 674 CQHSLLQRSRFRSGCCSSQVAVIDG 600
           CQ S L  S F SGC  S + +++G
Sbjct: 45  CQLSSLTSSNFASGCKISAMPILNG 69


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 207 YYESVKHAQSVQLDDIPLPAIQVPDNILYNTAPPSQIPLPADITQAPPGPVKSIL 371
           YYE    A S   + +PL  +   +     ++P   + +P++ T   P PV +I+
Sbjct: 510 YYE----AHSAFTNVLPLDGLPRYEEATRPSSPTESVEIPSNTTTIAPSPVPTII 560


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 447 NQQADRAGPRVVQLPRVFLCK 385
           N + DR  P+  Q PR+F+C+
Sbjct: 42  NIELDRTTPKKKQFPRLFVCE 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,252
Number of Sequences: 5004
Number of extensions: 64212
Number of successful extensions: 248
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)