Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0350
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0815 + 25458171-25458423,25458649-25458683                       38   0.006
05_07_0244 - 28625119-28625140,28625474-28625724                       34   0.13 
08_02_0912 - 22536181-22537011                                         32   0.54 
05_03_0289 - 11688733-11691342                                         30   2.2  
02_05_0458 + 29212123-29212403,29213748-29213772                       30   2.2  
03_01_0233 + 1833473-1833814,1833910-1834045,1834820-1834953,183...    29   2.9  
01_05_0813 + 25453692-25453973                                         29   2.9  
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    29   3.8  
11_06_0610 - 25449085-25453284                                         29   5.0  
04_04_0138 + 23067885-23068245,23068393-23068634                       29   5.0  
12_02_0563 + 20509811-20510067,20511402-20511474                       28   6.6  
11_06_0341 - 22507098-22507982,22508616-22508783,22518740-225188...    28   6.6  

>01_05_0815 + 25458171-25458423,25458649-25458683
          Length = 95

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 96  ETFDRVLKMYDKDEPEKWVDLKRQEMEYEKRRAHLISYYE-SVKHAQSVQLDDIPLPAIQ 272
           E F+R L +YD+D PE+W ++ R           L  YY+  V+  + ++   +P PA +
Sbjct: 20  EQFERALAVYDRDTPERWHNIARAVAGKSADEVKL--YYDLLVEDVKRIETGKVPFPAYR 77

Query: 273 VP 278
            P
Sbjct: 78  CP 79


>05_07_0244 - 28625119-28625140,28625474-28625724
          Length = 90

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +3

Query: 102 FDRVLKMYDKDEPEKWVDLKRQEMEYEKRRAHLISYYESVKH-AQSVQLDDIPLPAIQVP 278
           F++ L +YDK+ P++W ++ R  +   K    +  YYE ++   + ++   +P PA + P
Sbjct: 17  FEQALAVYDKETPDRWHNIAR-AVGGGKSAEDVKRYYEMLEEDIKHIESGKVPFPAYRCP 75


>08_02_0912 - 22536181-22537011
          Length = 276

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
 Frame = +3

Query: 171 MEYEKRRAHLISYYESVKHAQSVQLDDIPLPA---------IQVPDNILYNTAPP---SQ 314
           +EYE  +AHL+S+ E  + A + Q+ D P P+             +N+   T PP   + 
Sbjct: 74  LEYEAEKAHLLSHGEVKETAPAEQVPDAPRPSKKARGENGKAAAAENVEVQTPPPPLVAD 133

Query: 315 IPLPADITQAPPGP 356
            P  +   +APP P
Sbjct: 134 APRHSKKRKAPPPP 147


>05_03_0289 - 11688733-11691342
          Length = 869

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 2   ELQKIDEMEFNVLQPSPLNEKVLKEQKKKTQGNF*QSPQNV 124
           E+ K+ +   N+  P+P   K+L+E +   QG F   P N+
Sbjct: 399 EIFKMSDSSGNLAGPNPDPSKLLEEAESSAQGKFKSKPSNL 439


>02_05_0458 + 29212123-29212403,29213748-29213772
          Length = 101

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 96  ETFDRVLKMYDKDEPEKWVDLKR 164
           + F+R L +YD+D P++W ++ R
Sbjct: 11  KVFERALAIYDRDTPDRWQNVAR 33


>03_01_0233 +
           1833473-1833814,1833910-1834045,1834820-1834953,
           1835379-1835484,1836339-1836424,1836816-1837004,
           1837131-1837322,1837407-1837520,1837614-1837910
          Length = 531

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/79 (26%), Positives = 32/79 (40%)
 Frame = +3

Query: 123 YDKDEPEKWVDLKRQEMEYEKRRAHLISYYESVKHAQSVQLDDIPLPAIQVPDNILYNTA 302
           Y  +E    VDL  Q ++YE R         S+      +L+      + +P +     A
Sbjct: 290 YSTEEATALVDLASQCLQYEPRDRPNTGKLVSILDPLQTKLEVPSYEMLGIPKH--EEEA 347

Query: 303 PPSQIPLPADITQAPPGPV 359
           PP+  P PA   Q P  P+
Sbjct: 348 PPAPAPAPAPQPQHPLSPM 366


>01_05_0813 + 25453692-25453973
          Length = 93

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +3

Query: 102 FDRVLKMYDKDEPEKWVDLKRQEMEYEKRRAHLISYYESVKHAQSVQLDDIPLPAIQVPD 281
           F+R L +YD D P++W ++ R  M   K      S  E  +H + +Q D   + A  VP 
Sbjct: 28  FERALAVYDTDAPDRWHNVARY-MGGAK------SAEEVRRHYERLQADVEQIEAGGVPF 80

Query: 282 NILYNTAP 305
           ++ Y   P
Sbjct: 81  SLGYGATP 88


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 210 YESVKHAQSVQLDDIPLPAI--QVPDNI-LYNTAPPSQIPLPADITQAPPGPVKSILK 374
           Y    + +   +++ P+P +  +VP+N+ +    PP+  P P    +AP     SI+K
Sbjct: 209 YNPPNNTEGPVVEETPIPEVIDEVPNNVAVAMPTPPAPAPAPVPQEEAPKKSYASIVK 266


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +3

Query: 303  PPSQI---PLPADITQAPPGPVKSIL 371
            PPS +   P PA+ +Q PP PV+S+L
Sbjct: 1016 PPSPVKSSPPPAEKSQPPPSPVESVL 1041


>04_04_0138 + 23067885-23068245,23068393-23068634
          Length = 200

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 255 PLPAIQVPDNILYNTAPPSQIPLPADITQAPP 350
           P P + VP +   +TAP +  P P  +T+APP
Sbjct: 129 PSPPVSVPRSTPNSTAPST--PTPVTVTRAPP 158


>12_02_0563 + 20509811-20510067,20511402-20511474
          Length = 109

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 102 FDRVLKMYDKDEPEKWVDLKR 164
           F+R L  YDKD P +W ++ R
Sbjct: 13  FERALATYDKDTPGRWQNVAR 33


>11_06_0341 -
           22507098-22507982,22508616-22508783,22518740-22518893,
           22519396-22519728,22521106-22521374
          Length = 602

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 683 SRKCQHSLLQRSRFRSGCCSSQVAVIDGFT 594
           S+   H LL    + +GC    +A+ DGFT
Sbjct: 384 SKNLSHELLSAIEYLTGCSLKSLAIDDGFT 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,070,849
Number of Sequences: 37544
Number of extensions: 440425
Number of successful extensions: 1384
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)