Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0350
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41007| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_1339| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.96 
SB_44371| Best HMM Match : 7tm_1 (HMM E-Value=0.011)                   30   1.7  
SB_20156| Best HMM Match : GED (HMM E-Value=6.8e-16)                   30   2.2  
SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)                  30   2.2  
SB_4522| Best HMM Match : Plus-3 (HMM E-Value=3.8)                     30   2.2  
SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)                      29   3.9  
SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_29572| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_14374| Best HMM Match : PWI (HMM E-Value=10)                        28   6.8  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_58968| Best HMM Match : TP2 (HMM E-Value=2)                         28   9.0  
SB_45508| Best HMM Match : PT (HMM E-Value=7)                          28   9.0  

>SB_41007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 19/79 (24%), Positives = 39/79 (49%)
 Frame = +3

Query: 102 FDRVLKMYDKDEPEKWVDLKRQEMEYEKRRAHLISYYESVKHAQSVQLDDIPLPAIQVPD 281
           + +++K+  KD+PE  +D K    E + + + ++ +  S    Q   ++  P+P +Q   
Sbjct: 79  YSQIMKIKGKDDPESHLDKKHTNWEPKVKASRMLFFQLSDGGQQIQAMEYQPIPTLQA-- 136

Query: 282 NILYNTAPPSQIPLPADIT 338
                T P +++ L  DIT
Sbjct: 137 ----LTPPGTKVCLQRDIT 151


>SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1179

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 203  N*MGSPLFIFHFLTFEIYPFLWLIFVIH 120
            N +G PL+ F+F TF +Y  ++ +FVI+
Sbjct: 1080 NSLGRPLYWFNFSTFAVYLIMFTLFVIN 1107


>SB_1339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 203 N*MGSPLFIFHFLTFEIYPFLWLIFVIH 120
           N +G PL+ F+F TF +Y  ++ +FVI+
Sbjct: 113 NSLGRPLYWFNFSTFAVYLIMFTLFVIN 140


>SB_44371| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
          Length = 350

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
 Frame = -3

Query: 297 YCTECCQELVLQATEYHPTEQI----EHASLIRNM-KLNGLSSFHIPF----LDV-*DLP 148
           YCTE C+ +V   + +H  EQ+    +  S  RN  K N +    I F    L++  D P
Sbjct: 34  YCTERCRRIVHALSSFHFPEQVLQALDSVSYDRNSGKWNTVRLIPIEFKKSALNILQDGP 93

Query: 147 ISLA---HLCHTF*GLCQKFP*VFFFCSFN--TFSLSGDGCSTLNSI 22
             ++   H C+ +   C+  P +    S+N    SL+  GC++L S+
Sbjct: 94  FEMSRGFHRCYVW--ACKHAPRLIGHTSYNRTLSSLASHGCASLESV 138


>SB_20156| Best HMM Match : GED (HMM E-Value=6.8e-16)
          Length = 172

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 153 DLKRQEMEYEKRRAHLISYYESVKHAQSVQLD-DIPLPAIQVPDNILYNTAPPSQIPLPA 329
           DL  +  E  +RR  ++  Y S K A  +  D D    +I  P  +  +   P + P P 
Sbjct: 94  DLMEESEEEAQRREEMLKMYHSTKEALQIVGDIDTHTISIPTPPPVDNSDFDPRRPPAPP 153

Query: 330 DITQAPPGP 356
               APP P
Sbjct: 154 KPGGAPPIP 162


>SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)
          Length = 945

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +3

Query: 132 DEPEKWVDLKRQEMEYEKRRAHLISYYESVKHAQSVQLDDIPLPAIQVPDNILYNTAPP 308
           ++ +KW  +K++E +        I Y +++ +A  +    IPL A ++  +   NT PP
Sbjct: 770 EQIKKWATMKQEERDNLISSEESIVYSQAIHYANRMVYMRIPLNACEMMPSKTPNTQPP 828


>SB_4522| Best HMM Match : Plus-3 (HMM E-Value=3.8)
          Length = 123

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = +3

Query: 102 FDRVLKMYDKDEPEKWVDLKRQEMEYEKRRAHLISYYESVKHAQSVQLDDIPLPAIQ 272
           + +++K+  KD+PE  +D K    E + + + ++ +  S    Q   ++  P+P +Q
Sbjct: 59  YSQIMKIKGKDDPESHLDKKHTNWEPKVKASRMLFFQLSDGGQQIQAMEYQPIPTLQ 115


>SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)
          Length = 678

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 192 AHLISYYESV-KHAQSVQLDDIPLPAIQVPDNILYNTAPPSQIPLPADITQAPPGPVKSI 368
           +H  S  +S+   A S +L   P+ ++    ++ Y T+PP    +  D++ +P   V S 
Sbjct: 540 SHAKSITQSIISVAASAELQGSPVTSVTHSGDLKYTTSPPKSSIVTPDLSNSPSKAVMSS 599

Query: 369 LKKETIY 389
            ++   Y
Sbjct: 600 SRESIAY 606


>SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -3

Query: 273 LVLQATEYHPTEQIEHASLIRNMKLNGLSSFHIPFLDV*DLPISLAHLCHTF*GLCQ 103
           +V+Q TEY P+  ++   L ++ KLN L +  +  LD  +   SL  L  T   L Q
Sbjct: 83  MVVQITEYSPSVVVDAIVLFQDEKLNSLRARCLEILDSREHVKSLESLVTTNVNLLQ 139


>SB_29572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 520 VHLEKQHFRRNYRSFRCYPPLRT*MVKPSMTATWLEQQPL--LNRLLCNKECWHFLDRT 690
           +H +++H+   Y  +     L    +   +   ++E +P   +NR+L     WHFLDRT
Sbjct: 207 LHQKRRHYLHTYEFYLDAGAL----IPLDIAYIFIEHEPAFRINRILKFHRFWHFLDRT 261


>SB_14374| Best HMM Match : PWI (HMM E-Value=10)
          Length = 80

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -3

Query: 273 LVLQATEYHPTEQIEHASLIRNMKLNGLSSFHIPFLDV*DLPISLAHLCHTF*GLCQ 103
           +V+Q TEY P+  ++   L ++ KLN L +  +  LD  +   SL  L  T   L Q
Sbjct: 20  MVVQITEYSPSVVVDAIVLFQDEKLNSLRARCLEILDSREHVKSLESLVTTNVNLLQ 76


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +1

Query: 67   IERAKEKNSRKLLTESSKCMTKMSQRNG*ISNVKK 171
            ++  KE+ SR++L E S  MT++   +G +SN+++
Sbjct: 3238 LKELKEEISREVLAEVSGLMTRLDITSGEVSNLRQ 3272


>SB_58968| Best HMM Match : TP2 (HMM E-Value=2)
          Length = 190

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 338 PSPAWSSEIYTQKGNYLQ 391
           P   W+ E+YT KG +LQ
Sbjct: 5   PGDVWTKELYTPKGTFLQ 22


>SB_45508| Best HMM Match : PT (HMM E-Value=7)
          Length = 261

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 210 YESVKHAQSVQLDDIPLPAIQVPDNILYNTAPPSQIPLPADITQAPPGP 356
           +E  ++ ++  LD    PA  +P N   N   P   PLP D    PP P
Sbjct: 186 HEITQNMEASSLDRSENPAT-IPVNTPNNPRSPKPSPLPQDHRNPPPPP 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,670,501
Number of Sequences: 59808
Number of extensions: 483979
Number of successful extensions: 1376
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)