Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0350
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     30   1.9  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    30   1.9  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    30   1.9  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    29   3.4  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    29   3.4  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2 prot...    29   4.5  
AF067613-5|AAN73864.1|  266|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z70311-11|CAA94380.1|  484|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z70306-6|CAA94326.1|  484|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z35640-1|CAA84705.1|  307|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 300  APPSQIPLPADITQAPPGPVKSILKK 377
            +P   IP+PA+  +APP PVK+ +KK
Sbjct: 960  SPKKAIPIPANTQEAPPTPVKNPVKK 985


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 300 APPSQIPLPADITQAPPGP 356
           APP  +PL ++I QAPP P
Sbjct: 200 APPPPVPLTSNIPQAPPAP 218


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 300 APPSQIPLPADITQAPPGP 356
           APP  +PL ++I QAPP P
Sbjct: 186 APPPPVPLTSNIPQAPPAP 204


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 300 APPSQIPLPADITQAPPGP 356
           APP  +PL ++I QAPP P
Sbjct: 186 APPPPVPLTSNIPQAPPAP 204


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 228 AQSVQLDDIP--LPAIQVPDNILYNTAPPSQIPLPADITQAP-PGPVKSILKKET 383
           +Q VQ+   P  LP +QVP   L     P Q+P P  ITQ P   PV+ I  + T
Sbjct: 340 SQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLP-PVQITQPPIQTPVQPIFFQTT 393


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 228 AQSVQLDDIP--LPAIQVPDNILYNTAPPSQIPLPADITQAP-PGPVKSILKKET 383
           +Q VQ+   P  LP +QVP   L     P Q+P P  ITQ P   PV+ I  + T
Sbjct: 437 SQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLP-PVQITQPPIQTPVQPIFFQTT 490


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
           protein K10C2.1 protein.
          Length = 2314

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 216 SVKHAQSVQLDDIPLPAIQVPDNILYNTAPPSQIPLPADITQAP 347
           +VK A  +   D P PA+Q+  N LYNT       +P D+T  P
Sbjct: 513 TVKGAGHMVPMDRPGPALQIFYNYLYNTNGGYSNQVPYDLTATP 556


>Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical
           protein C56A3.7 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 261 PAIQVPDNILYNTAPPSQIPLPADITQAPPGP 356
           P+I +P++    +APP+Q   P   +  PP P
Sbjct: 159 PSIPLPEHPAQQSAPPTQQSRPQTTSHKPPNP 190


>U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2
           protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 261 PAIQVPDNILYNTAPPSQIPLPADITQAPPGP 356
           P+I +P++    +APP+Q   P   +  PP P
Sbjct: 159 PSIPLPEHPAQQSAPPTQQSRPQTTSHKPPNP 190


>AF067613-5|AAN73864.1|  266|Caenorhabditis elegans Hypothetical
           protein F56D6.6 protein.
          Length = 266

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 8   QKIDEMEFNVLQPSPLNEKVLKEQKKKTQG 97
           +K DEME +  +    NEK  KE KKK +G
Sbjct: 152 KKKDEMEKDFNKTKEENEKKAKEDKKKAEG 181


>Z70311-11|CAA94380.1|  484|Caenorhabditis elegans Hypothetical
           protein T25B9.9 protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
 Frame = +1

Query: 157 SNVKKWNMKRGEPI*FHITNQ*SMLNLFSWMIFRCLQYKFLTT------FCTILRPL--H 312
           +N+ K+  ++GEPI   I +         W  F  L+Y    T      F   L  L   
Sbjct: 236 ANILKYRDEQGEPIVPKIRDSAGQKGTGKWTCFAALEYGLPVTLIGEAVFARCLSALKDE 295

Query: 313 KYRCPRILPKPRLVQ*NLYSKRKLFTKKNPREL 411
           + R  + LP+P++    +   +++F K+  + L
Sbjct: 296 RVRASKQLPRPQVSPDTVVQDKRVFIKQISKAL 328


>Z70306-6|CAA94326.1|  484|Caenorhabditis elegans Hypothetical
           protein T25B9.9 protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
 Frame = +1

Query: 157 SNVKKWNMKRGEPI*FHITNQ*SMLNLFSWMIFRCLQYKFLTT------FCTILRPL--H 312
           +N+ K+  ++GEPI   I +         W  F  L+Y    T      F   L  L   
Sbjct: 236 ANILKYRDEQGEPIVPKIRDSAGQKGTGKWTCFAALEYGLPVTLIGEAVFARCLSALKDE 295

Query: 313 KYRCPRILPKPRLVQ*NLYSKRKLFTKKNPREL 411
           + R  + LP+P++    +   +++F K+  + L
Sbjct: 296 RVRASKQLPRPQVSPDTVVQDKRVFIKQISKAL 328


>Z35640-1|CAA84705.1|  307|Caenorhabditis elegans Hypothetical
           protein F43D9.2 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255 PLPAI-QVPDNILYNTAPPSQIPLPADITQAPPGPVKSILKKETIYKEK 398
           P PA+   P  + Y TAPP   P P  +T  P     +    +T YK+K
Sbjct: 51  PSPAVPSTPVRVPYPTAPPPIPPAPEAVTAGPKKMALAPSSTKT-YKQK 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,182,299
Number of Sequences: 27780
Number of extensions: 374859
Number of successful extensions: 1293
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)