Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0350
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    27   0.18 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.73 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.2  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   5.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   5.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.2  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 645 PTSLQQRMLALSGQNIDDFMKEMGRG 722
           P  L +R    S +N DDFMK +G G
Sbjct: 2   PDFLGKRYKLYSSENFDDFMKALGVG 27


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 141 EKWVDLKRQEMEYEKRRAHLISYYE 215
           E W+  + +E EYEK +  +I  YE
Sbjct: 41  EAWLVQQEREQEYEKLKRKMILEYE 65


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 252 IPLPAIQVPDNILYNTAPP 308
           +P   +  PD ILYN A P
Sbjct: 82  VPYNRVWRPDTILYNNADP 100


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 96  ETFDRVLKMYDKDEPEKW 149
           +  D++ + +  +EPEKW
Sbjct: 84  QNLDKLAEWFTTNEPEKW 101


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 96  ETFDRVLKMYDKDEPEKW 149
           +  D++ + +  +EPEKW
Sbjct: 84  QNLDKLAEWFTTNEPEKW 101


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 237 VQLDDIPLPAIQVPDNILYNTAPPS-QIPLPADITQAPPGPVKSILKKETIYK 392
           V++  +P   I +PD +LYN A  + ++ L    T    G V    K   IYK
Sbjct: 105 VEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVS--WKPPAIYK 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,710
Number of Sequences: 438
Number of extensions: 4896
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)