Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0350
(731 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19510.1 68414.m02430 myb family transcription factor contain... 34 0.085
At2g21650.1 68415.m02575 myb family transcription factor contain... 31 0.79
At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family... 31 0.79
At3g54260.1 68416.m05997 expressed protein various predicted pro... 30 1.4
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 30 1.4
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 2.4
At1g07330.1 68414.m00781 hypothetical protein 29 2.4
At1g75250.1 68414.m08742 myb family transcription factor contain... 29 3.2
At1g78910.1 68414.m09199 pseudouridine synthase family protein l... 29 4.2
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica... 28 5.6
At4g03550.1 68417.m00486 glycosyl transferase family 48 protein ... 28 5.6
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 28 7.3
At4g36570.1 68417.m05192 myb family transcription factor conatin... 28 7.3
At3g55950.1 68416.m06217 protein kinase family protein contains ... 28 7.3
At3g29635.1 68416.m03729 transferase family protein similar to a... 28 7.3
At2g43150.1 68415.m05358 proline-rich extensin-like family prote... 28 7.3
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica... 27 9.7
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica... 27 9.7
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica... 27 9.7
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote... 27 9.7
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 27 9.7
At2g42510.1 68415.m05261 spliceosome protein-related contains Pf... 27 9.7
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 27 9.7
At1g23540.1 68414.m02960 protein kinase family protein contains ... 27 9.7
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 34.3 bits (75), Expect = 0.085
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 102 FDRVLKMYDKDEPEKWVDLKRQ--EMEYEKRRAHLISYYESVKHAQSVQLDDIPLPAIQV 275
F+R L +YDKD P++W ++ + E+ + H Y V+ +++ D +PLP +
Sbjct: 20 FERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRH---YDILVEDLMNIEQDLVPLPKYKT 76
Query: 276 PD 281
D
Sbjct: 77 VD 78
>At2g21650.1 68415.m02575 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA-binding domain
Length = 101
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 96 ETFDRVLKMYDKDEPEKWVDLKR----QEMEYEKRRAHLISYYESVKHAQSVQLDDIPLP 263
+ F+R L +YD+D P++W ++ R + E KR+ L+ V+ +S++ +P P
Sbjct: 20 KAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLL-----VRDIESIENGHVPFP 74
>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
protein similar to proline-rich protein precursor
GB:AAC34889 [Glycine max]
Length = 388
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 177 YEKRRAHLISYYESVKHAQSVQLDDIPLPAIQVPDNILYNTAPPSQIPLPADITQAPPGP 356
+ +R+ HL S+ H QS Q+ + P PA P + P + +PA TQ P
Sbjct: 153 HPQRQGHLNPAVTSMSHPQSSQVQNAPPPASHHPTS---QQPPFHHLDIPASSTQLQQQP 209
Query: 357 VKS 365
+ S
Sbjct: 210 MHS 212
>At3g54260.1 68416.m05997 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 379
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 341 LGNIRGQRYL*RGRSIVQNVVRNLYCRQRNIIQLNRLSMLH*FVI*N*MGSPLFIFHFLT 162
LG +RG+R + G S+++N +L C ++++ +R + + P FH L
Sbjct: 111 LGKMRGKRIMLVGDSMMRNQWESLVCLVQSVLPTHRKKLTY--------NGPTMSFHSLD 162
Query: 161 FEI-YPFLWLIFVIHFEDSV 105
FE F W ++ + V
Sbjct: 163 FETSIEFCWAPLLVELKRGV 182
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 255 PLPAIQVPDNILYNTAPPSQIPLPADITQAPPGP 356
P P++ P ++ T P +P P D+T PP P
Sbjct: 188 PTPSVPSPPDVT-PTPPTPSVPSPPDVTPTPPTP 220
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 255 PLPAIQVPDNILYNTAPPSQIPLPADITQAPPGP 356
P P++ P ++ T P +P P D+T PP P
Sbjct: 203 PTPSVPSPPDVT-PTPPTPSVPSPPDVTPTPPTP 235
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 255 PLPAIQVPDNILYNTAPPSQIPLPADITQAPPGPVKS 365
P P + P +Y+ PP P P + PP PV S
Sbjct: 632 PPPPVHSPPPPVYSPPPPVYSPPPPPVKSPPPPPVYS 668
>At1g07330.1 68414.m00781 hypothetical protein
Length = 685
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 105 DRVLKMYDKDEPEKWVDLKRQEMEYEKRRAHLIS---YYESVKHAQSVQLDDIPLPAIQV 275
D+ + + +D+ + +DL EME KR HLI+ V+ A L D+ +P + V
Sbjct: 155 DKKIVAWTEDDQKNLMDLGNSEMERNKRLEHLITRRRMRRLVRLAAESSLMDMEVPPVCV 214
Query: 276 PDN 284
N
Sbjct: 215 GRN 217
>At1g75250.1 68414.m08742 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 126
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 102 FDRVLKMYDKDEPEKW 149
F+R L +YDKD P++W
Sbjct: 20 FERALAVYDKDTPDRW 35
>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 478
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 255 PLPAIQVPDNILYNTAPPSQIPLPADITQAPPGP 356
P I+V +N+ + PP Q PLP + PP P
Sbjct: 27 PSSVIRVTNNVAH-LGPPKQGPLPRQLISLPPFP 59
>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
to gi_3883126_gb_AAC77826
Length = 135
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 297 TAPPSQIPLPADI-TQAPPGP 356
T PPS P PAD+ T +PP P
Sbjct: 70 TTPPSVAPSPADVPTASPPAP 90
>At4g03550.1 68417.m00486 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1780
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 132 DEPEKWVDLKRQEMEYEKRRAHLISYYESVKH 227
D P+KW+ K + EY RR ++ Y+S+KH
Sbjct: 708 DAPDKWLWHKICKNEY--RRCAVVEAYDSIKH 737
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 255 PLPAIQVPDNILYNTAPPSQIPLPADITQAPPGPV 359
P+P P ++P S P+PA + +PP PV
Sbjct: 85 PVPESSPPVPAPMVSSPVSSPPVPAPVADSPPAPV 119
>At4g36570.1 68417.m05192 myb family transcription factor conatins
PFAM profile: PF00249 myb-like DNA binding domain
Length = 85
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 102 FDRVLKMYDKDEPEKWVDLKR 164
F+R L YD+D P++W ++ R
Sbjct: 20 FERALATYDQDTPDRWHNVAR 40
>At3g55950.1 68416.m06217 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; similar to
cytokinin-regulated kinase 1 [Nicotiana tabacum]
gi|10998537|gb|AAG25966
Length = 814
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 285 ILYNTAPPSQIPLPADITQAPPGPVKS 365
I + +PPSQ PLP PP P S
Sbjct: 358 IQFPASPPSQFPLPPPPPPPPPSPSTS 384
>At3g29635.1 68416.m03729 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 458
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 267 LQATEYHPTEQIEHASLIRNMKLNGLSSFHIPFLDV*DLPISLAH 133
L+ ++HPTE++ LI++ L S +P L++ L I L H
Sbjct: 34 LRWLQFHPTERVIFYKLIKDSSLESFLSVILPKLEL-SLSIVLRH 77
>At2g43150.1 68415.m05358 proline-rich extensin-like family protein
similar to CRANTZ hydroxyproline-rich glycoprotein
[Manihot esculenta] gi|7211797|gb|AAF40442; similar to
extensin gi|1165322|gb|AAB53156; contains proline-rich
extensin domains, INTERPRO:IPR002965
Length = 212
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 255 PLPAIQVPDNILYNTAPPSQI--PLPADITQAPPGPVKS 365
P P ++ P Y +PP + P P + +PP PVKS
Sbjct: 61 PPPPVKSPPPPYYYHSPPPPVKSPPPPYVYSSPPPPVKS 99
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 255 PLPAIQVPDNILYNTAPPSQI--PLPADITQAPPGPVKS 365
P P ++ P Y +PP + P P + +PP PVKS
Sbjct: 157 PPPPVKSPPPPYYYHSPPPPVKSPPPPYLYSSPPPPVKS 195
>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1150
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 213 ESVKHAQSVQLDDIPLPAIQVPDNILYNTAPPSQ 314
+S H Q QL L +QVP N LYN +Q
Sbjct: 590 QSHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQ 623
>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1164
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 213 ESVKHAQSVQLDDIPLPAIQVPDNILYNTAPPSQ 314
+S H Q QL L +QVP N LYN +Q
Sbjct: 589 QSHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQ 622
>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1165
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 213 ESVKHAQSVQLDDIPLPAIQVPDNILYNTAPPSQ 314
+S H Q QL L +QVP N LYN +Q
Sbjct: 590 QSHSHPQPQQLQQHKLQQLQVPQNQLYNGQQAAQ 623
>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
kinase, putative brassinosteroid-insensitive protein
BRI1 - Arabidopsis thaliana, PIR:T09356
Length = 836
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 367 IDFTGPGGAWVISAGSGICEGGAVLYRMLSGTCIA 263
IDFTG +W SA S +C G A + + L G +A
Sbjct: 65 IDFTGVLKSWNNSASSQVCSGWAGI-KCLRGQVVA 98
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 270 QVPDNILYNTAPPSQIPLPADITQAPP 350
Q+P I ++TAP ++P+ + + A P
Sbjct: 219 QLPSTISFSTAPDKKVPIQSSVRTADP 245
>At2g42510.1 68415.m05261 spliceosome protein-related contains Pfam
domain, PF04938: Survival motor neuron (SMN) interacting
protein 1 (SIP1)
Length = 646
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 162 RQEMEYEKRRAHLISYYESVKHAQSVQLDDIPLPAIQVPDNILYNT--APPSQIPLPADI 335
R +ME + L++ YE +K+ +S+ L+D + + DN YN+ P + D
Sbjct: 385 RNQMESMRLLPELVTEYEGLKNHKSI-LEDYVVKEEKTEDNDDYNSILRPAFAVDGEPDF 443
Query: 336 TQAPP 350
PP
Sbjct: 444 DSGPP 448
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 252 IPLPAIQVPDNILYNTAPPSQIPLPADITQAP 347
+P P V +N + + APP PLP Q P
Sbjct: 228 VPQPLFPVVNNSIPSQAPPFSAPLPVGGAQQP 259
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 255 PLPAIQVPDNILYNTAPPSQIPLPADITQAPPGPVKS 365
PLP+I P + + PPS P D T +PP P +
Sbjct: 66 PLPSILPP--LTDSPPPPSDSSPPVDSTPSPPPPTSN 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,029,223
Number of Sequences: 28952
Number of extensions: 340752
Number of successful extensions: 1227
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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