Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0348
         (643 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    25   0.53 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   0.93 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   1.6  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   4.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   8.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   8.6  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 151 SNLEIHLSFENSHSFVFPHNFFF 219
           S++ +H+ F NS+ + F H FFF
Sbjct: 56  SSVTLHVCF-NSYMYAFTHIFFF 77


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 130 LWLRAPNSNLEIHLSFENSHSFVFPHNFFFGVAYYRAMENMKYLSVNLRI 279
           L+L  P S ++  +  +  HSF   + + + +        M Y++ NLRI
Sbjct: 19  LFLLCPRS-IDEKIKRQERHSFYKIYKYTYNIVAVSLTAYMVYITTNLRI 67


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 347 VATESTVRFWFQRFRSGNF 403
           + +ES  +F+F+R R+G F
Sbjct: 364 ICSESNRKFYFKRARNGTF 382


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 452 EELKVIVEADQSQSTSEIAAGFGVSDKTVL 541
           EEL ++ +   S+++   AAGF   D T+L
Sbjct: 339 EELALLAQQSTSRTSKFSAAGFFPVDFTLL 368


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 356 ESTVRFWFQRFR 391
           EST++ WFQ  R
Sbjct: 112 ESTIKVWFQNRR 123


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 354 QKARYVFGFNVFVLEISTF 410
           Q A  ++GF  F+  +STF
Sbjct: 226 QVANSIYGFQNFLFVLSTF 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,633
Number of Sequences: 336
Number of extensions: 3597
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)