Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0348
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.00 
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    27   2.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.0  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   4.0  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     26   5.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.0  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   7.0  

>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +2

Query: 422 RGRLETKVENEELKVIVEADQS----QSTSEIAAGFGVSDKTVLIH-LTQTGERQKPFER 586
           R R+ETKV   +  ++ E  +S        ++   FG  +  V+IH +T+  E   PF +
Sbjct: 786 RLRIETKVPLNDA-ILTEFSKSIRFRNVNKDLLLVFGNMEDRVIIHSVTRINENSVPFNK 844

Query: 587 YVVPH 601
            ++PH
Sbjct: 845 NLLPH 849


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 219 WRRLLPCNGKHEIPIGKFTNTSSTVAPLLQKQLEGL 326
           W+R      K  IP+GKF++  +   P L    E L
Sbjct: 210 WKRAAADYKKSSIPLGKFSDGETQTMPSLSPSTENL 245


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 46   HTICTEY*VLTYEISVLSY*PL*SEICPLWLRAPNSNLEIHLSFENSHSFVFPHNF 213
            +TIC E  +L Y I  + Y  L  +  PL+ +A  S    +     +++F+ P NF
Sbjct: 2081 NTICQELEILWYAIREVLYPSLIYQDIPLFFKAEES--YFNFPAVKANAFIDPDNF 2134


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 625 CKFPFTSFMRYNISFKGFLSFP 560
           C+F  T + +Y+ S KG+L +P
Sbjct: 130 CRFTITPYSKYSNSEKGWLCYP 151


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 199 FPHNFFFGVAYYRAMENMKYLSVNLRIRVLPWHH 300
           FPHN  F  A +   E+ +   + L + V  W H
Sbjct: 127 FPHNIEFETADFLRWESKRKFKIILALSVSKWVH 160


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 267  KFTNTSSTVAPL-LQKQLEGLIMCTALVSQQKARYVFGFNVFVLEISTFRTNPVDD 431
            +F+ TSS    L L   ++  ++C     + K +  +G  VFVL  S  R  P DD
Sbjct: 1162 EFSVTSSVSTKLFLDPPIDTCLLCQ---EELKDKRPYGTLVFVLRSSVLRLFPADD 1214


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 173 LK*ISKFEFGALNQRGHISDQSGQYDKTLISYVR 72
           LK I +  FGA     H+SD    + K  I Y++
Sbjct: 622 LKPIQEETFGAFQSNLHLSDSWEDFQKNFIIYLK 655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,181
Number of Sequences: 5004
Number of extensions: 58823
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)