Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0348
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0129 - 1954470-1955129,1956285-1956371,1956475-1956663,195...    29   3.1  
09_02_0067 - 3812508-3813158,3813944-3814030,3814124-3814312,381...    29   4.1  
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675...    29   4.1  
09_02_0389 - 8456957-8459917,8461941-8462267                           28   5.5  
07_01_1156 - 10873223-10873417,10873498-10873579,10874235-108743...    28   7.2  
11_01_0106 - 792190-792730,793905-794018,794206-794540                 27   9.6  
01_06_0772 - 31864564-31864653,31864733-31864816,31865547-318656...    27   9.6  

>09_01_0129 -
           1954470-1955129,1956285-1956371,1956475-1956663,
           1956772-1956900,1957386-1957472,1957572-1958036,
           1959844-1959923,1961295-1961358,1961444-1961455
          Length = 590

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +2

Query: 377 FQRFRSGNFDLQNQPRGRLETKVENEELKVIVEADQSQSTSEIA 508
           F R  + +FD +++ R R    V +E + ++V + +S +TSE+A
Sbjct: 226 FLRTVNKDFDKESEDRLRCMPAVADEAIDILVNSYKSSNTSEVA 269


>09_02_0067 -
           3812508-3813158,3813944-3814030,3814124-3814312,
           3814475-3814603,3814917-3815003,3815126-3815563
          Length = 526

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +2

Query: 377 FQRFRSGNFDLQNQPRGRLETKVENEELKVIVEADQSQSTSEIA 508
           F R  + +FD +++ + + E  V +E + ++V + +S  TSE+A
Sbjct: 165 FLRTVNKDFDKESEEKLQYEPAVADEAIDILVNSYKSSDTSEVA 208


>03_06_0222 +
           32466379-32466741,32466849-32466948,32467443-32467547,
           32467627-32467789,32467995-32468115,32468625-32468705,
           32468813-32468911,32468955-32468986,32468987-32469137,
           32469477-32469563,32470290-32470409,32470514-32470645,
           32470743-32470840,32470919-32471042,32471126-32471233,
           32471822-32471957,32472751-32472861,32472963-32473026,
           32473133-32473205,32473762-32473938,32474012-32474122,
           32474189-32474449,32474811-32474981,32475073-32475228,
           32475590-32475823,32475936-32476103,32476316-32476425,
           32476513-32477041
          Length = 1394

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 115 SEICPLWLRAPNSNLEIHLSFENSHSFVFP 204
           +E+CPLW++  N  L   LSF    +F  P
Sbjct: 158 AELCPLWIKKFNRALMRTLSFSEHETFDHP 187


>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 389 RSGNFDLQNQPRGRLETKVENEELKVIVEADQSQSTSEIAAGFGVS--DKTVL 541
           R   F     P+  L   +E E+LK+I +   S+STS + A FG+    KT+L
Sbjct: 160 RISEFPGDLSPQYTLVGDIEQEKLKLINKLTGSESTSAVIAIFGLGGIGKTML 212


>07_01_1156 - 10873223-10873417,10873498-10873579,10874235-10874336,
            10874456-10874553,10874692-10874778,10874869-10875317,
            10875414-10875744,10875766-10875884,10875935-10876124,
            10876319-10876657,10876735-10876875,10876958-10877440,
            10877703-10877901,10879447-10879643
          Length = 1003

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 225  RLLPCNGKHEIPIGKFTNTSSTVAPLLQKQLEG 323
            R   CN K++ P+   TNT ++V  L   Q+ G
Sbjct: 930  RYQACNPKYQAPVSALTNTGTSVWCLTATQVPG 962


>11_01_0106 - 792190-792730,793905-794018,794206-794540
          Length = 329

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 422 RGRLETKVENEELKVIVEADQSQSTSEIAAGFGVSDKTVLIHLTQTGERQK 574
           RGR     +N+ +K++++AD  Q    + A  G ++   L + T+T  R++
Sbjct: 68  RGRKRVNRDNDNVKLLLQADDDQEA--VIADHGDANAKPLPNFTKTRRRKQ 116


>01_06_0772 -
           31864564-31864653,31864733-31864816,31865547-31865603,
           31865700-31865828,31866704-31866790,31866856-31866933,
           31867150-31867306,31868000-31868141,31868835-31868986,
           31869118-31869371,31869819-31869896
          Length = 435

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 249 HEIPIGKFTNTSSTVAPLLQKQLEGLIMCTALVSQQKARYVFGFNVFVLEISTFRTNPVD 428
           H I +  F  +S TVA + +     L+  + +V    A Y+FGF  F+      + +P  
Sbjct: 186 HMILLTVFAQSSFTVANIFEGMFWFLLPASLIVINDIAAYLFGF--FLGRTPLIKLSPKK 243

Query: 429 DW 434
            W
Sbjct: 244 TW 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,044,094
Number of Sequences: 37544
Number of extensions: 352081
Number of successful extensions: 914
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)