Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0348
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1)                      28   5.6  
SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06)                 28   7.4  
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)               28   7.4  
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_6005| Best HMM Match : DUF488 (HMM E-Value=4.3)                     28   7.4  

>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 567 LSPVCVKWINTVLSLTPKPAAISEVLCD*SASTITFNSSFSTLVSSRP 424
           LSPV +    T L  TP P+ +   L   ++ST+T  ++     S++P
Sbjct: 76  LSPVVLSTQRTFLRTTPIPSTVKPRLTTTNSSTVTVRTTIGDTNSAKP 123


>SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1)
          Length = 409

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 154 NLEIHLSFENSHSFVFPHNFFFGVAYYRAMENMK 255
           +LE  LS ++SHS +   N FF V YY A +++K
Sbjct: 255 DLEYDLSLKSSHSALAAANLFF-VIYYCAEQSIK 287


>SB_44265| Best HMM Match : DUF1032 (HMM E-Value=4e-06)
          Length = 1073

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 626 LQVPIHFVHEVQHIVQRVFVFPRFVSSGLIQFYHLPRSLQL 504
           +Q P     +  H +  VFV   FV++G + F  L ++ +L
Sbjct: 448 IQTPAFLSTDTMHWIALVFVLTAFVTTGFLVFSELDKTQEL 488


>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 365 VRFWFQRFRSGNFDLQNQPRGRLETKVENEELKVIVE 475
           V FW Q+    NF+  N PRGR     E EEL+ +++
Sbjct: 726 VAFWLQQ----NFE--NSPRGRSHLAYETEELQAVLK 756


>SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 896

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 355 CCDTSAVHIINPSSCFCSNGATVELVFVNLPIG 257
           CCD   V+  NP +  C  G  V L   N P+G
Sbjct: 566 CCDNRCVY--NPKTNKCCRGRVVSLKIRNRPLG 596


>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +1

Query: 145 PNSNLEIHLSFENSHSFVFPHNFFFGVAYYR 237
           P+ +++++  FEN+ + +FP+N   G+  +R
Sbjct: 502 PDDSIQVYCDFENNSTCIFPNNQTRGMESHR 532


>SB_6005| Best HMM Match : DUF488 (HMM E-Value=4.3)
          Length = 142

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 345 VSQQKARYVFGFNVFVLE-ISTFRTNP--VDDWRPKWKMKN*RLLWKRINHKALQR 503
           V Q+K   +   N+ +++ +S  +T+P  VD W   WK  N RL  KR   +  +R
Sbjct: 63  VEQEKQAEIDRQNLVIIDKLSEIKTSPARVDAWNKDWKPSNDRL--KRFRDRRQRR 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,403,389
Number of Sequences: 59808
Number of extensions: 435983
Number of successful extensions: 1436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)