Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0348
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 56 2e-08
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 49 2e-06
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 48 6e-06
Z92786-4|CAB07206.1| 553|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL033510-2|CAA22065.1| 281|Caenorhabditis elegans Hypothetical ... 38 0.006
Z92786-6|CAB07208.1| 569|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z81481-7|CAB63437.3| 511|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z92786-2|CAB07211.1| 518|Caenorhabditis elegans Hypothetical pr... 36 0.033
Z83109-11|CAJ43454.1| 345|Caenorhabditis elegans Hypothetical p... 36 0.033
AF025457-10|AAB70972.1| 148|Caenorhabditis elegans Hypothetical... 32 0.40
Z83219-5|CAM35834.1| 390|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z92786-3|CAB63202.1| 488|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81481-1|CAB03947.1| 404|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81526-5|CAB04262.1| 983|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81496-13|CAB04075.1| 365|Caenorhabditis elegans Hypothetical p... 29 2.1
U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical p... 29 2.1
L19249-1|AAC37167.1| 303|Caenorhabditis elegans homeobox protei... 29 2.1
L14429-3|AAA28218.1| 305|Caenorhabditis elegans C.elegans homeo... 29 2.1
AL031627-26|CAA20972.1| 365|Caenorhabditis elegans Hypothetical... 29 2.1
AC084159-11|ABO16465.1| 449|Caenorhabditis elegans F-box a prot... 29 2.1
Z81116-4|CAB03304.1| 372|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF025457-8|AAB70968.2| 383|Caenorhabditis elegans Hypothetical ... 29 2.8
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 28 4.9
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co... 28 4.9
Z81553-6|CAB04495.1| 388|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81524-6|CAB04254.2| 308|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81454-4|CAD89725.1| 483|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81103-8|CAB03212.2| 308|Caenorhabditis elegans Hypothetical pr... 28 6.5
U70844-5|AAB09096.2| 148|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL032663-9|CAA21764.2| 187|Caenorhabditis elegans Hypothetical ... 28 6.5
AF068708-6|AAC17758.1| 341|Caenorhabditis elegans Hypothetical ... 28 6.5
U21308-12|AAB93315.2| 360|Caenorhabditis elegans Hypothetical p... 27 8.6
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 27 8.6
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 8.6
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 27 8.6
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 8.6
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 8.6
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 8.6
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 56.0 bits (129), Expect = 2e-08
Identities = 35/111 (31%), Positives = 51/111 (45%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEE 457
YEF G A E R I G G + +T + WFQ+F++G+F L+ R ++ E+
Sbjct: 17 YEFRLGHSAMEAERNICGAMGEGALSYNTAKSWFQKFKNGDFSLEEIERSGRPVELNEED 76
Query: 458 LKVIVEADQSQSTSEIAAGFGVSDKTVLIHLTQTGERQKPFERYVVPHERS 610
L +VE + S E+ T+ HL + G K VPHE S
Sbjct: 77 LVKLVEEEPRLSLREMEEKLECCHSTIARHLGRLGFTSK--LGIWVPHELS 125
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/111 (30%), Positives = 50/111 (45%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEE 457
YEF G A E R I G G + +T + WFQ+ ++G+F L+ R ++ E+
Sbjct: 17 YEFRLGHSAMEAERNICGAMGEGALSYNTAKSWFQKLKNGDFSLEEIERSGRPVELNEED 76
Query: 458 LKVIVEADQSQSTSEIAAGFGVSDKTVLIHLTQTGERQKPFERYVVPHERS 610
L +VE + S E+ T+ HL + G K VPHE S
Sbjct: 77 LVKLVEEEPRLSLREMEEKLECCHSTIARHLGRLGFTSK--LGTWVPHELS 125
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +2
Query: 332 VYGAGVATESTVRFWFQRFRSGNFDLQNQPR-GRLETKVENEELKVIVEADQSQSTSEIA 508
V G + +T++FWF++ + N+DL ++PR GR ++ E++ +E D + EI+
Sbjct: 4 VLGDNSVSYNTMKFWFEKIKKKNYDLDDKPRSGRPRLDID-EDISRALEDDPRSMSREIS 62
Query: 509 AGFGVSDKTVLIHLTQTGERQKPFERYVVPHERSE 613
A T++ HL ++G + P +VPH S+
Sbjct: 63 ATLKRPHTTIINHLHESG--RVPKFGQLVPHNLSD 95
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 48.0 bits (109), Expect = 6e-06
Identities = 30/101 (29%), Positives = 46/101 (45%)
Frame = +2
Query: 308 ETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEELKVIVEADQS 487
E R I G G + +T + WFQ+F++G+F L+ R ++ E+L +VE +
Sbjct: 2 EAERNICGAMGEGALSYNTAKSWFQKFKNGDFSLEEIERSGRPVELNEEDLVKLVEEEPR 61
Query: 488 QSTSEIAAGFGVSDKTVLIHLTQTGERQKPFERYVVPHERS 610
S E+ T+ HL + G K VPHE S
Sbjct: 62 LSLREMEEKLECCHSTIARHLGRLGFTSK--LGTWVPHELS 100
>Z92786-4|CAB07206.1| 553|Caenorhabditis elegans Hypothetical
protein F47H4.7 protein.
Length = 553
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQNQPRGRLE----TKV 445
YE G E G GV + FWF RFR+GN DL LE ++
Sbjct: 69 YEHLHGKTVTEAFENFCGKVGNGVIDLRSFEFWFNRFRTGNHDLSYDINLELEPRSLAEM 128
Query: 446 ENEELKVIVEADQSQSTS 499
N+ +K IV SQS +
Sbjct: 129 HNDIMKNIVRELNSQSAN 146
>AL033510-2|CAA22065.1| 281|Caenorhabditis elegans Hypothetical
protein Y40H7A.2 protein.
Length = 281
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQNQP 421
YEF G A E R I G G + +T + WFQ+ NFDL+N P
Sbjct: 17 YEFRLGHSAMEAERNICGAMGEGALSYNTAKSWFQKL-FFNFDLKNMP 63
>Z92786-6|CAB07208.1| 569|Caenorhabditis elegans Hypothetical
protein F47H4.9 protein.
Length = 569
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/85 (30%), Positives = 33/85 (38%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEE 457
YE G + G GV + FWF RFR+GN DL LE + E
Sbjct: 86 YEHLHGKNVGQAYESFCDKVGNGVIDLRSFEFWFNRFRTGNHDLDYDIDSELEPRSLAEM 145
Query: 458 LKVIVEADQSQSTSEIAAGFGVSDK 532
K I+ + SE G SD+
Sbjct: 146 HKDIMRNILRELNSEPTISPGPSDR 170
>Z81481-7|CAB63437.3| 511|Caenorhabditis elegans Hypothetical
protein C38D9.6 protein.
Length = 511
Score = 35.9 bits (79), Expect = 0.025
Identities = 26/85 (30%), Positives = 33/85 (38%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEE 457
YE G R G GV + FWF RFR+GN DL LE + E
Sbjct: 25 YEHLHGRTVTAAYRNFCNKVGNGVIDFRSFGFWFDRFRTGNHDLGYDIDKELEPRSLAEM 84
Query: 458 LKVIVEADQSQSTSEIAAGFGVSDK 532
K I+ + S+ G SD+
Sbjct: 85 HKDIMRNILRELNSQSPNSPGSSDR 109
>Z92786-2|CAB07211.1| 518|Caenorhabditis elegans Hypothetical
protein F47H4.4 protein.
Length = 518
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/75 (32%), Positives = 29/75 (38%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEE 457
YE G E G GV + FWF RFR+GN DL LE + E
Sbjct: 70 YEHLHGKTVTEAYENFCRKVGNGVIDFRSFGFWFDRFRTGNHDLGYDIDSELEPRSLAEM 129
Query: 458 LKVIVEADQSQSTSE 502
K I+ + SE
Sbjct: 130 HKDIMRNILRELNSE 144
>Z83109-11|CAJ43454.1| 345|Caenorhabditis elegans Hypothetical
protein F44G3.12 protein.
Length = 345
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEE 457
YE++ + + GAG + +FWF+RF+SGN D+ + +V E
Sbjct: 18 YEYFDNQPIETSYKNFCGKVGAGAMSFQEFKFWFERFQSGNHDMDEKLESNNLPQVNPEP 77
Query: 458 LKVIVEADQSQSTSEIA 508
+ +D + SE A
Sbjct: 78 FEFPSLSDIPEKISEKA 94
>AF025457-10|AAB70972.1| 148|Caenorhabditis elegans Hypothetical
protein C08E3.11 protein.
Length = 148
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 338 GAGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEELKVIVE 475
G V + + FWF RF +GN DL R R + E+ +K++VE
Sbjct: 38 GNDVMSYNDFDFWFYRFHNGNHDLHYDRRVR--ARSESFAIKIMVE 81
>Z83219-5|CAM35834.1| 390|Caenorhabditis elegans Hypothetical
protein C31C9.8 protein.
Length = 390
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDL 409
YEF + E+ + +V G + FWF RF G+FDL
Sbjct: 18 YEFRKNLPIFESFKNFCHVLGDDLIGFPEFEFWFYRFYKGDFDL 61
>Z92786-3|CAB63202.1| 488|Caenorhabditis elegans Hypothetical
protein F47H4.6 protein.
Length = 488
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 338 GAGVATESTVRFWFQRFRSGNFDL 409
G GV + FWF RF++GN DL
Sbjct: 53 GNGVIDFRSFEFWFNRFQTGNHDL 76
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/46 (19%), Positives = 22/46 (47%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQN 415
+EF +G E ++ G +W+Q+ ++G+F +++
Sbjct: 138 FEFLQGNSIFEAYEKLCVTVGKDAVKYWDFEYWYQKIKAGDFSMES 183
>Z81481-1|CAB03947.1| 404|Caenorhabditis elegans Hypothetical
protein C38D9.1 protein.
Length = 404
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 371 FWFQRFRSGNFDLQNQPRGRLETKVENE 454
+WF RF +GN DLQ+ R ++E + N+
Sbjct: 50 YWFHRFYNGNHDLQDDNR-QIEVRNSND 76
>Z81526-5|CAB04262.1| 983|Caenorhabditis elegans Hypothetical
protein F33H2.1 protein.
Length = 983
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 319 SSCFCSNGATVELVFVNLPIGISCF 245
SS +C GA ++ V N+P GI CF
Sbjct: 745 SSFYCELGAIIKYVCSNVPAGILCF 769
>Z81496-13|CAB04075.1| 365|Caenorhabditis elegans Hypothetical
protein Y102A5C.1 protein.
Length = 365
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +2
Query: 245 KT*NTYR*IYEYEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDL 409
K N R YEF G E + V G FWF RF +GN +L
Sbjct: 7 KNKNDLRQCVLYEFIDGKPVFEAYKSFCDVIGDSCMDYVDFEFWFMRFANGNLNL 61
>U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical
protein F55G1.13 protein.
Length = 616
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 325 NPSSCFCSNGATVELVFVNLPIGISC-FPLHGNKRRQRKNYEEKQMNDCF 179
+P S +CSNG T E++F + C F +G+K + ++ + + CF
Sbjct: 139 DPCSGYCSNGGTCEMLFSDTTPYCQCPFDYYGDKCQTTRSVQTSYVG-CF 187
>L19249-1|AAC37167.1| 303|Caenorhabditis elegans homeobox protein
protein.
Length = 303
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +2
Query: 281 EFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEEL 460
+ ++G + A R N G++ S VR WFQ RS + Q + + + ++EE+
Sbjct: 226 DMFKGQMYVVGAERENLAQRLGLSP-SQVRIWFQNRRSKHRRKQQEEQQSTTLEEKSEEI 284
Query: 461 KVIVEADQSQSTSEI 505
E D + ++
Sbjct: 285 GKDEEEDDEEDEDDV 299
>L14429-3|AAA28218.1| 305|Caenorhabditis elegans C.elegans homeobox
protein 23 protein.
Length = 305
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +2
Query: 281 EFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEEL 460
+ ++G + A R N G++ S VR WFQ RS + Q + + + ++EE+
Sbjct: 228 DMFKGQMYVVGAERENLAQRLGLSP-SQVRIWFQNRRSKHRRKQQEEQQSTTLEEKSEEI 286
Query: 461 KVIVEADQSQSTSEI 505
E D + ++
Sbjct: 287 GKDEEEDDEEDEDDV 301
>AL031627-26|CAA20972.1| 365|Caenorhabditis elegans Hypothetical
protein Y102A5C.1 protein.
Length = 365
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +2
Query: 245 KT*NTYR*IYEYEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDL 409
K N R YEF G E + V G FWF RF +GN +L
Sbjct: 7 KNKNDLRQCVLYEFIDGKPVFEAYKSFCDVIGDSCMDYVDFEFWFMRFANGNLNL 61
>AC084159-11|ABO16465.1| 449|Caenorhabditis elegans F-box a protein
protein 221 protein.
Length = 449
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 338 GAGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEEL 460
G + S FW RF SGN DL R R + + ++
Sbjct: 32 GNEIVRFSDAEFWISRFESGNHDLNYDKRPRKVIHISDSQV 72
>Z81116-4|CAB03304.1| 372|Caenorhabditis elegans Hypothetical
protein T06C12.4 protein.
Length = 372
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 338 GAGVATESTVRFWFQRFRSGNFDLQNQPR 424
G T FWF RFR GN DL R
Sbjct: 38 GKDAMTHYDFDFWFYRFREGNHDLHYDRR 66
>AF025457-8|AAB70968.2| 383|Caenorhabditis elegans Hypothetical
protein C08E3.9 protein.
Length = 383
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 338 GAGVATESTVRFWFQRFRSGNFDL 409
G GV S FW+ RF +GN DL
Sbjct: 38 GNGVMGFSDFEFWYDRFSNGNHDL 61
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -2
Query: 609 LRS*GTTYRSKGFCLSPVCVKWINTVLSLTPKPAAISEVLCD*SASTITFNSSFSTLVSS 430
L S GTT S LSP+ V +L+P + +S ++ S + T +S+ ++L S
Sbjct: 2053 LPSAGTTQPSTVSTLSPIVSTLSPIVSTLSPIVSTLSPIVSTLSPTVSTLSSNATSLTPS 2112
Query: 429 RP 424
P
Sbjct: 2113 NP 2114
>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
complex protein protein15 protein.
Length = 1127
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 452 EELKVIVEADQSQSTSEIAAGFGVSDKTVLIHLTQTGERQKPFERYVVPHERSEWEL 622
+E+ + + + +E FG K L T G RQK FERY E+ ++E+
Sbjct: 758 QEMIALGKPADAMELAEKHKDFGTLVKNYLT--TDVGTRQKTFERYKKMFEKDDFEM 812
>Z81553-6|CAB04495.1| 388|Caenorhabditis elegans Hypothetical
protein F56H6.6 protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 160 EIHLSFENSHSFVFPHNFFF 219
++ + FEN F F HNFFF
Sbjct: 238 QLKMGFENQKVFEFHHNFFF 257
>Z81524-6|CAB04254.2| 308|Caenorhabditis elegans Hypothetical
protein F32H5.6a protein.
Length = 308
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 628 VCKFPFTSFMRYNISFKGFLSFPGLCQVD*YSFITYPEACSYL 500
V FP +S N F F LC Y+ I +P+ C ++
Sbjct: 109 VLYFPMSSIKASNFPFTNTAIFLALCIAVVYTVIGFPDKCGFV 151
>Z81454-4|CAD89725.1| 483|Caenorhabditis elegans Hypothetical
protein B0391.6 protein.
Length = 483
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 338 GAGVATESTVRFWFQRFRSGNFDLQNQPR 424
G + S FW RF SGN DL R
Sbjct: 40 GNEIVRFSDAEFWISRFESGNHDLNYDKR 68
>Z81103-8|CAB03212.2| 308|Caenorhabditis elegans Hypothetical
protein F32H5.6a protein.
Length = 308
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 628 VCKFPFTSFMRYNISFKGFLSFPGLCQVD*YSFITYPEACSYL 500
V FP +S N F F LC Y+ I +P+ C ++
Sbjct: 109 VLYFPMSSIKASNFPFTNTAIFLALCIAVVYTVIGFPDKCGFV 151
>U70844-5|AAB09096.2| 148|Caenorhabditis elegans Hypothetical
protein ZK154.6a protein.
Length = 148
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 394 WKFRPSEPTPWTTGDQSGK*RIKG 465
W P PWTT +Q+GK I G
Sbjct: 21 WPNTSPAPLPWTTTEQTGKSSISG 44
>AL032663-9|CAA21764.2| 187|Caenorhabditis elegans Hypothetical
protein Y75B12B.1 protein.
Length = 187
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFD--LQNQPRGRLETKVEN 451
YE ++ ++ +G + FW +RF GN D L+ + ++ ++E
Sbjct: 18 YEVFKLNTFSQGFANFCSTFGNDIMHNREFEFWHRRFYDGNHDLGLEISSQNAIDHELER 77
Query: 452 EELKVIVEADQSQS 493
+ I+ +D S+S
Sbjct: 78 AKNGQILRSDPSRS 91
>AF068708-6|AAC17758.1| 341|Caenorhabditis elegans Hypothetical
protein C18G1.3 protein.
Length = 341
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 145 PNSNLEIHLSFENSHSFVFPHNFFF 219
P++++E+ + EN F F H FFF
Sbjct: 193 PHNHIELKNAIENKQVFQFHHRFFF 217
>U21308-12|AAB93315.2| 360|Caenorhabditis elegans Hypothetical
protein ZK1290.9 protein.
Length = 360
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 278 YEFYRGTIAAETARRINYVYGAGVATESTVRFWFQRFRSGNFDL 409
YE AE+ + G + T +WF RF +GN DL
Sbjct: 18 YESLDDKPIAESYKNFCRKVGKDIMTLHDFDYWFYRFHNGNHDL 61
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 506 AAGFGVSDKTVLIHLTQTGERQKPFERYVVPHERSEWEL 622
AAGFG + I + + +KP V +R EW L
Sbjct: 16 AAGFGARESIAAISDMLSSQHKKPVRSSYVESDRVEWAL 54
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 506 AAGFGVSDKTVLIHLTQTGERQKPFERYVVPHERSEWEL 622
AAGFG + I + + +KP V +R EW L
Sbjct: 16 AAGFGARESIAAISDMLSSQHKKPVRSSYVESDRVEWAL 54
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 506 AAGFGVSDKTVLIHLTQTGERQKPFERYVVPHERSEWEL 622
AAGFG + I + + +KP V +R EW L
Sbjct: 74 AAGFGARESIAAISDMLSSQHKKPVRSSYVESDRVEWAL 112
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 506 AAGFGVSDKTVLIHLTQTGERQKPFERYVVPHERSEWEL 622
AAGFG + I + + +KP V +R EW L
Sbjct: 74 AAGFGARESIAAISDMLSSQHKKPVRSSYVESDRVEWAL 112
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 506 AAGFGVSDKTVLIHLTQTGERQKPFERYVVPHERSEWEL 622
AAGFG + I + + +KP V +R EW L
Sbjct: 74 AAGFGARESIAAISDMLSSQHKKPVRSSYVESDRVEWAL 112
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 506 AAGFGVSDKTVLIHLTQTGERQKPFERYVVPHERSEWEL 622
AAGFG + I + + +KP V +R EW L
Sbjct: 46 AAGFGARESIAAISDMLSSQHKKPVRSSYVESDRVEWAL 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,927
Number of Sequences: 27780
Number of extensions: 328423
Number of successful extensions: 855
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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