Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0348
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03430.1 68418.m00296 phosphoadenosine phosphosulfate (PAPS) ...    30   1.5  
At5g24590.2 68418.m02905 turnip crinkle virus-interacting protei...    29   3.5  
At5g11310.1 68418.m01320 pentatricopeptide (PPR) repeat-containi...    29   3.5  
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family...    27   8.0  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    27   8.0  
At1g03270.1 68414.m00305 expressed protein contains Pfam profile...    27   8.0  

>At5g03430.1 68418.m00296 phosphoadenosine phosphosulfate (PAPS)
           reductase family protein low similarity to SP|P38913 FAD
           synthetase (EC 2.7.7.2) {Saccharomyces cerevisiae};
           contains Pfam profiles PF01507: Phosphoadenosine
           phosphosulfate reductase family, PF00994: Probable
           molybdopterin binding domain
          Length = 497

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 428 RLETKVENEELKVIVEADQSQSTSEIAAGF-GVSDKTVLIHLTQTG 562
           RL+TK  N  + VI  A    S  E+A  F G  D TVL+HL + G
Sbjct: 14  RLKTKYNNA-IFVIKRALALYSIEEVAFSFNGGKDSTVLLHLLRAG 58


>At5g24590.2 68418.m02905 turnip crinkle virus-interacting protein /
           TCV-interacting protein (TIP) contains Pfam PF02365: No
           apical meristem (NAM) domain; similar to NAC2
           (GI:6456751) {Arabidopsis thaliana}; identical to cDNA
           TIP mRNA,  GI:9408600
          Length = 451

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 430 SSTGLVLKVEISRTKTLKPKTYRAFCCDTSAVHIINPSSC 311
           SS  +V +VE+S    + PKT     CD +   ++ PS C
Sbjct: 187 SSPTVVDEVEMSEVSPVFPKTEETNPCDVAESSLVIPSEC 226


>At5g11310.1 68418.m01320 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 602

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = -3

Query: 569 VFPRFVSSG-LIQFYHLPRSLQLSLKCFVIDPLPQ*PLILHFPLWSPVVHGVGSEGR 402
           V P  V+ G LI+ Y   R +Q++++  V++ +    + ++F +++P++ G+G  GR
Sbjct: 281 VKPTVVTYGTLIEGYCRMRRVQIAME--VLEEMKMAEMEINFMVFNPIIDGLGEAGR 335


>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
           protein similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1309

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 309 KQLEGL--IMCTALVSQQKARYVFGFNVFVLEISTFRTNPVDDWRPKWKM 452
           + L GL  + CT L++   A    G ++     S    +P D W   WKM
Sbjct: 53  ENLPGLYNMSCTQLLALANATVATGSSIGASSSSLSSQHPTDSWINSWKM 102


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 341 AGVATESTVRFWFQRFRSGNFDLQNQPRGRLETKVENEELKVIVEADQSQSTS 499
           AG  T S+V  WF    S +  +  + R  + TK +NE+L+ +V    + S S
Sbjct: 309 AGRDTTSSVLTWFFWLLSKHPQVMAKLRHEINTKFDNEDLEKLVYLHAALSES 361


>At1g03270.1 68414.m00305 expressed protein contains Pfam profile
           PF01595: Domain of unknown function
          Length = 499

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 419 VGSEGRNFQNENVETKNVPCFL 354
           V + GRNFQ     T+++PC L
Sbjct: 381 VKNRGRNFQQNGTVTRDLPCLL 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,249,755
Number of Sequences: 28952
Number of extensions: 301247
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)