Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0345
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    75   1e-14
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    30   0.42 
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   9.0  

>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
 Frame = +1

Query: 34  LNMTSQVTPPSVSWAQRNAR-------IFLTFNV-ECEKPDINIEPKSITFKGICEPEKK 189
           +++ +Q+  P V WAQR+ +       I+LT  + +   P IN+ P+ +           
Sbjct: 1   MSLNTQI--PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGANAH 58

Query: 190 MHEVLIPLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRW 369
            + V I  + ++D +KS +   GR I  +L K+++ E +WP LT +K + HWL+ DF+RW
Sbjct: 59  -YAVQIDFFKDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRW 117

Query: 370 QDEDE 384
            DEDE
Sbjct: 118 VDEDE 122


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 199 VLIPLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSL 318
           VL PLY E+ P+KS +      +E+ L K KV E  W +L
Sbjct: 233 VLDPLYEEIVPEKSSFKLFSSKVEITLIK-KVSEIKWEAL 271


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -2

Query: 299 SSTFSFANSTSINLPLLTHMLFLGSTSA*SGIKTSCIFFSGSHIPLN---VIDLGSMFIS 129
           SST S ++S+S + P+ + +    S+SA S + +S    SGS    +   V    +  IS
Sbjct: 152 SSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNSTIS 211

Query: 128 GFSHSTLNVKKIRA 87
           GFS ST +     A
Sbjct: 212 GFSTSTTSASSSAA 225


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 194 CIFFSGSHIPLNVIDLGSMFI 132
           CIFFS + +P  +I L S F+
Sbjct: 329 CIFFSSTKVPCQLIRLPSDFV 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,650
Number of Sequences: 5004
Number of extensions: 56793
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)