Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0345
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646... 67 1e-11
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529... 55 5e-08
03_03_0227 - 15596445-15596522,15596635-15596767,15596861-155969... 33 0.33
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 31 1.0
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 29 4.1
09_02_0544 - 10435796-10435852,10435944-10436288,10436477-10436971 29 5.4
06_01_0333 + 2404459-2404857,2404917-2405009,2405428-2405522,240... 29 5.4
08_02_0313 - 15659600-15659716,15660376-15660495,15660581-156606... 28 7.1
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 28 7.1
04_01_0263 - 3532481-3532656,3532710-3532719,3532754-3532785,353... 28 9.4
01_03_0003 + 11509530-11512772 28 9.4
>03_05_0537 +
25363026-25363217,25363672-25363828,25364660-25364694,
25364803-25364848,25365277-25365311
Length = 154
Score = 67.3 bits (157), Expect = 1e-11
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Frame = +1
Query: 61 PSVSWAQRNARIFLTFNVECEKPDI-NIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKK 237
P V WAQR+ +I+LT ++ K + EP+ + F + + + L+ V P+
Sbjct: 7 PEVLWAQRSEKIYLTISLPDAKDVVLKTEPQGL-FSFLAVANGEPFSFTLELFDSVLPEG 65
Query: 238 SMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGD---DLDNM 408
S K L ++ + +K + +W L ++KH ++KVD+N+W DEDE D D D+
Sbjct: 66 SKTKTKMGLRNIICSIQKEKKGWWKRLLKSEEKHPYIKVDWNKWCDEDEESDAPVDSDDA 125
Query: 409 NDMFSDKD 432
D +D+D
Sbjct: 126 FDEGNDRD 133
>03_03_0158 -
14951504-14951568,14952722-14952797,14952876-14952943,
14952997-14953156,14953239-14953425,14953982-14953986
Length = 186
Score = 55.2 bits (127), Expect = 5e-08
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Frame = +1
Query: 61 PSVSWAQRNARIFLTFNV-ECEKPDINIEPKS-ITFKGICEPEKKMHEVLIPLYAEVDPK 234
PS WAQR+ ++FLT + + +N++P+ F + +E+ + L+ V+ +
Sbjct: 5 PSTKWAQRSDKVFLTIELPDARDVKLNLKPEGQFIFSAKGPADDTPYELDLELFDAVNVE 64
Query: 235 KSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHH-WLKVDFNRWQDEDE 384
+S R I L+ +K + +WP L + K +LKVD+++WQDED+
Sbjct: 65 ESKAAVAARSICYLI--KKAESKWWPRLLKKEGKPPVFLKVDWDKWQDEDD 113
>03_03_0227 -
15596445-15596522,15596635-15596767,15596861-15596913,
15597825-15597875,15597999-15598068,15598402-15598586,
15598727-15598780,15599060-15599581
Length = 381
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 208 PLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQD 375
PL ++ P+ S W+ K LI V+ P + S+++ K WLK+ QD
Sbjct: 24 PLDGDLKPRGSTWLQKADLIFVVRNTNSSSSPCFLSISNLSAKLSWLKLKLYALQD 79
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 283 KEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMNDMFSDKDMN 438
KEK DE L ++KK K++ ++E+E+G++ D ND +K N
Sbjct: 251 KEKEDENEEEKLEEEEKKDKEEKLEEKEKENEEENGNEKDKENDNEIEKVKN 302
>09_06_0352 +
22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 367 WQDEDESGDDLDNMNDMFSDKDMN 438
W D+DES D DN +D SD+ ++
Sbjct: 374 WHDDDESNDTADNWHDDNSDQPID 397
>09_02_0544 - 10435796-10435852,10435944-10436288,10436477-10436971
Length = 298
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 554 LSICNYGQYILCFLIRNKKAPSLTVVVKL 640
+++ N +YI C L+RN+K P +++ L
Sbjct: 147 IAVRNGNKYIFCILLRNRKNPEKLILLAL 175
>06_01_0333 +
2404459-2404857,2404917-2405009,2405428-2405522,
2406146-2406219,2406307-2406395,2406745-2406858
Length = 287
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 55 TPPSVSWAQRNARIFLTFNVECEKPDINIEPKSITF 162
+PP+ Q+N R+F T+++ K ++++P+ F
Sbjct: 79 SPPAAQGGQQNGRVFSTYSIYKGKAAMSLDPRPPQF 114
>08_02_0313 -
15659600-15659716,15660376-15660495,15660581-15660679,
15660802-15660913,15661025-15661128,15661316-15661495,
15661612-15661881,15662529-15662825,15663432-15663677
Length = 514
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 250 NKGRLIEVLLAKEKVDEPYWPSLTSDK-KKHHWLKVDFNRWQDEDESGDDLDNMN 411
N+G +EVL A++ D P W T+D +++ WL + N + +GD L M+
Sbjct: 161 NEG-FVEVLAAQQSPDNPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMD 214
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 220 EVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGD 393
E +P K+M + +EVLL+K + Y SL+ + + VD R ++ SG+
Sbjct: 648 EAEPSKTMHITSDEQVEVLLSKSIFKKHYDHSLSIHGQVE--IAVDIERLSNKSTSGN 703
>04_01_0263 -
3532481-3532656,3532710-3532719,3532754-3532785,
3533237-3533348,3533586-3533649,3533778-3533843,
3533946-3534073,3534205-3534342,3534427-3534539,
3534611-3534776,3535045-3535107,3535197-3535304,
3535408-3535524,3535620-3535785,3535942-3536039,
3536136-3536233,3536378-3536514,3536654-3536878,
3536971-3537176,3537286-3537525
Length = 820
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 211 LYAEVDPKKSMWVNKGRLIEVLLAKEKVDEP 303
L +D +M V G +I+ LLA +KVD P
Sbjct: 265 LSLNIDVSTTMIVKPGPVIDFLLANQKVDHP 295
>01_03_0003 + 11509530-11512772
Length = 1080
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 188 FFSGSHIP-LNVIDLGSMFISGFSHSTLNVKKIR 90
FF+ H+ L V++LGS +S HS N+K++R
Sbjct: 608 FFTKPHMRFLRVLELGSCRLSELPHSVGNLKQLR 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,639,231
Number of Sequences: 37544
Number of extensions: 307394
Number of successful extensions: 783
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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