Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0345
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043) 42 7e-04
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.083
SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33) 34 0.14
SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5) 30 2.3
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 29 3.1
SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56) 29 3.1
SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_11742| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_31159| Best HMM Match : Pox_C7_F8A (HMM E-Value=1.2) 29 5.4
SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07) 28 7.2
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 28 9.5
SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 9.5
>SB_57840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 50.4 bits (115), Expect = 2e-06
Identities = 18/46 (39%), Positives = 33/46 (71%)
Frame = +1
Query: 259 RLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDD 396
R +E +AK+K E +W L +K+ +WLK++F+RW++ED++ D+
Sbjct: 37 RYVEFSIAKQKGREFFWQRLVDSEKRPNWLKINFDRWKNEDDTEDE 82
>SB_33072| Best HMM Match : Arm (HMM E-Value=0.00043)
Length = 701
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +1
Query: 253 KGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDD 396
KG I VLL K + DE WP L K+K+ ++ +DF+RW+ S +D
Sbjct: 603 KGSEILVLLRKARGDE--WPRLLKSKEKYPYISIDFDRWEVWSSSEED 648
>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 34.7 bits (76), Expect = 0.083
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 271 VLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMNDMFSD 426
VLL ++ E + DK KH +++ D + DED+ DDL+ D S+
Sbjct: 14 VLLLLQEFSEAKFKRRPIDKSKHDYIQTDTEKKVDEDDDTDDLETEQDENSE 65
>SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)
Length = 386
Score = 33.9 bits (74), Expect = 0.14
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Frame = +1
Query: 37 NMTSQVTPPSVSWAQRNARIFLTFNVECEKPDINIEPK-SITFKGICEPEKKMHEVLIPL 213
N+T ++ +SW+Q + ++ +FN K N P E +K++ ++ +
Sbjct: 245 NITEKMKQNILSWSQADMMLYRSFNKTFWKRIENEGPAFYYDLARFRERKKEVFDMCVKS 304
Query: 214 YAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGD 393
VD S KG L+ L K D + SL + + ++L + R + + E D
Sbjct: 305 DKHVDQAYSHHYVKGYLLRDLRGK---DREFCRSLV--RNELNYLAHNLQRHRKQQEEID 359
Query: 394 DLDNMNDMFSDKD 432
DL DMF ++
Sbjct: 360 DLGEFPDMFDKRN 372
>SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 33.5 bits (73), Expect = 0.19
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +1
Query: 70 SWAQRNARIFLTF----NVECEKPDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKK 237
+W+Q + +TF N E I+P I K EKK+ + LYA+V P
Sbjct: 247 TWSQSGDNVTVTFSLPTNTNLEDIQCTIKPAHIEVK--LSSEKKLLQG--KLYAKVKPDD 302
Query: 238 SMWVNKGRLIEVLLAKEKVDEPYWPSL--TSDKKKH 339
S W +E++L K V E +W ++ + D+ K+
Sbjct: 303 STWTVVDNSLEIVLDK-VVPEHHWSTVVESDDRGKY 337
>SB_3121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 271 VLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMND 414
VLL ++ E + D+ KH +++ D + DED+ DDL+ D
Sbjct: 14 VLLLLQEFSEAKFRRRPIDESKHDYIQTDTEKEVDEDDDDDDLETEQD 61
>SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)
Length = 1072
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 271 VLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMND 414
VLL ++ E + DK K ++++D + DED+ DDL+ D
Sbjct: 14 VLLLLQEFSEGKFKRRPIDKSKLDYIQMDTEKKVDEDDDTDDLETEQD 61
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/92 (25%), Positives = 42/92 (45%)
Frame = +1
Query: 157 TFKGICEPEKKMHEVLIPLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKK 336
T++ I + + + L L A V KS N+G EV A ++ +T +K
Sbjct: 554 TYRRISKELEYKQQGLDKLSAHVQEIKSD-SNEGPAQEVRDALRRLSSTRSQIITVLSEK 612
Query: 337 HHWLKVDFNRWQDEDESGDDLDNMNDMFSDKD 432
LK NRW + ++ +L ++N+ F ++
Sbjct: 613 EQRLKYGLNRWSEFEKLYSELRHINEWFESRE 644
>SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)
Length = 579
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 175 EPEKKMHEVLIPLYAEVDPKKSMWVNKGRLIE-VLLAKEKVDEPYWPSLTSDKKKHHWLK 351
E E K + ++ A + + NK RL +LA+ +VD Y+P L S +++
Sbjct: 357 EMENKRFKTIMEKPAAAPAQPTPQGNKFRLRHHKVLARNEVDGFYYPGLVSKCINSRYVE 416
Query: 352 VDFN 363
VDFN
Sbjct: 417 VDFN 420
>SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 355 DFNRWQDEDESGDDLDNMNDMFSDKDMN 438
D N D+++ DD D MNDM D DMN
Sbjct: 183 DDNDMNDDNDMNDDND-MNDMNDDNDMN 209
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 355 DFNRWQDEDESGD--DLDNMNDMFSDKDMN 438
D N D+++ D D+D+ NDM D DMN
Sbjct: 207 DMNDMNDDNDMNDMNDMDDDNDMNDDNDMN 236
>SB_11742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 355 DFNRWQDEDESGDDLDNMNDMFSDKDMN 438
D N D+++ DD D MNDM D DMN
Sbjct: 32 DDNDMNDDNDMNDDND-MNDMNDDNDMN 58
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 355 DFNRWQDEDESGD--DLDNMNDMFSDKDMN 438
D N D+++ D D+D+ NDM D DMN
Sbjct: 56 DMNDMNDDNDMNDMNDMDDDNDMNDDNDMN 85
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 373 DEDESGDDLDNMNDMFSDKDMN 438
++D +D+++MNDM D DMN
Sbjct: 91 NDDNDMNDMNDMNDMNDDNDMN 112
>SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -2
Query: 284 FANSTSINLPLLTHMLFLGSTSA*SGIKTSCIFFSGSHIPLNVIDLGSMFISGFSHSTLN 105
F ++ ++ L L M + S A S I ++ F SG + I LG+ + +SHSTL+
Sbjct: 163 FGSTVAVPLILAAPMCYDNSPLAKSEIISTIFFVSGLCTLIQTI-LGNRLVFRYSHSTLH 221
Query: 104 VK 99
++
Sbjct: 222 LQ 223
>SB_31159| Best HMM Match : Pox_C7_F8A (HMM E-Value=1.2)
Length = 429
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 298 EPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMND 414
EP S S+K+++ +L RW+D+D + LD ND
Sbjct: 111 EPVASSFLSEKEENSFLTEKHVRWEDQDLESEKLDE-ND 148
>SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07)
Length = 227
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/102 (23%), Positives = 43/102 (42%)
Frame = +1
Query: 127 PDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPY 306
P+ +T KG+ ++ + LY+ + P S K + V L KEK+ E +
Sbjct: 109 PNFGDRSVEVTVKGLKGVNYQLQ--ICRLYSSIVPSTSYLKAKSGTLTVFLKKEKMGEKW 166
Query: 307 WPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMNDMFSDKD 432
+ +KK +D + +D S +D M M+ + D
Sbjct: 167 EDVVYKEKKDFKPPGLD----ESKDPSEGIMDLMKKMYDEGD 204
>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
Length = 685
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 337 HHWLKVDFNRWQDEDESGDDLDNMND 414
HH V N +D+++ DD++N ND
Sbjct: 522 HHQAAVKVNNNKDDNDDDDDINNSND 547
>SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1554
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 256 GRLIEVLLAKEKVDEPYWPSLTSDKKKHHWL 348
G L+ L A+ +V +P W T+D +K++ L
Sbjct: 915 GNLLSFLRARREVYQPTWTKTTNDPEKNYTL 945
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,997,821
Number of Sequences: 59808
Number of extensions: 385502
Number of successful extensions: 1274
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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