Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0345
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13642-6|AAG00038.1| 175|Caenorhabditis elegans Hypothetical pr... 76 2e-14
Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical pr... 32 0.51
DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein. 32 0.51
Z95619-4|CAB09113.2| 397|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81482-1|CAB03953.2| 208|Caenorhabditis elegans Hypothetical pr... 28 6.3
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 28 6.3
AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical... 28 6.3
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 28 6.3
>U13642-6|AAG00038.1| 175|Caenorhabditis elegans Hypothetical
protein ZC395.10 protein.
Length = 175
Score = 76.2 bits (179), Expect = 2e-14
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Frame = +1
Query: 61 PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKK 237
P+V WAQR + ++LT V E + ++ E + F+G + +K +E + + E+DP
Sbjct: 5 PTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDPAS 62
Query: 238 SMWVNKG-RLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLD 402
R++E+ + K+ +WP L +K K HWLKVDF +W+DEDE + D
Sbjct: 63 VKHTGSSTRVVEITVQKKT--PAWWPRLLQNKGKVHWLKVDFGKWKDEDEDDEAED 116
>Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical
protein C07E3.1a protein.
Length = 816
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 175 EPEKKMHEVLIPLYAEVDPKKSMWVNKGRLIEVLLAK--EKVDEPYWPSLTSDKKKHHWL 348
+P +MHE +I L + P S W+ + L ++++ K E+V++ W +T + H WL
Sbjct: 488 DPSTQMHE-MIELVEQWIPLLSAWITENILEQLVVPKIAERVNQ--WDPMTDEIPIHEWL 544
>DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein.
Length = 830
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 175 EPEKKMHEVLIPLYAEVDPKKSMWVNKGRLIEVLLAK--EKVDEPYWPSLTSDKKKHHWL 348
+P +MHE +I L + P S W+ + L ++++ K E+V++ W +T + H WL
Sbjct: 502 DPSTQMHE-MIELVEQWIPLLSAWITENILEQLVVPKIAERVNQ--WDPMTDEIPIHEWL 558
>Z95619-4|CAB09113.2| 397|Caenorhabditis elegans Hypothetical
protein H21P03.2 protein.
Length = 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +1
Query: 202 LIPLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDED 381
L+ L + + + +N G +I+ + A K+ + + + K H VD + W DE
Sbjct: 105 LLELVGQTTRETLLEINGGAVIDPVDAGNKIGDAL-KQIETSVKAH---TVDKSNWCDEW 160
Query: 382 ESGDDLDNMNDMFSD 426
D++D +N+M+ D
Sbjct: 161 IVDDNMDEINEMYDD 175
>Z81482-1|CAB03953.2| 208|Caenorhabditis elegans Hypothetical
protein C40H5.2 protein.
Length = 208
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 271 VLLAKEK--VDEPYWPSLTSDKKKHHWLKVD--FNRWQDEDESGDDLDNMN 411
V + KE+ + + +W S +S+K + + +NRW +ED+ DDL N
Sbjct: 123 VRMRKERRGLTQVFWESASSNKMGFYISVPNKHYNRWAEEDDMFDDLPTEN 173
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +1
Query: 124 KPDINIEPKSITFKG--ICEPEKKMHEVLIPLYA----EVDPKKSMWVNKGRLIEVLLAK 285
K + EP ++ + + + MH+V Y + +P KS+W++ GR E L +
Sbjct: 16 KKTMQFEPSTLIYDAAKLIREKFAMHDVNANEYGIFRLDENPSKSLWMDNGRTFEHYLVR 75
Query: 286 EKVDEPY 306
K + Y
Sbjct: 76 NKDEIEY 82
>AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical
protein Y71G12B.11b protein.
Length = 996
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +1
Query: 124 KPDINIEPKSITFKG--ICEPEKKMHEVLIPLYA----EVDPKKSMWVNKGRLIEVLLAK 285
K + EP ++ + + + MH+V Y + +P KS+W++ GR E L +
Sbjct: 16 KKTMQFEPSTLIYDAAKLIREKFAMHDVNANEYGIFRLDENPSKSLWMDNGRTFEHYLVR 75
Query: 286 EKVDEPY 306
K + Y
Sbjct: 76 NKDEIEY 82
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +1
Query: 124 KPDINIEPKSITFKG--ICEPEKKMHEVLIPLYA----EVDPKKSMWVNKGRLIEVLLAK 285
K + EP ++ + + + MH+V Y + +P KS+W++ GR E L +
Sbjct: 16 KKTMQFEPSTLIYDAAKLIREKFAMHDVNANEYGIFRLDENPSKSLWMDNGRTFEHYLVR 75
Query: 286 EKVDEPY 306
K + Y
Sbjct: 76 NKDEIEY 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511,412
Number of Sequences: 27780
Number of extensions: 310385
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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