Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0345
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +1

Query: 196 EVLIPLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWL 348
           E LI L     P    W+ +  L  ++L K  ++   W  LT     H W+
Sbjct: 493 EPLIELIEHWMPLLPNWILENILDMLVLPKLTLEVEEWNPLTDTVPIHTWI 543


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -1

Query: 195 VHFFFWFAYSFERNRFRF 142
           ++ F+WFAY     R  +
Sbjct: 438 INVFYWFAYLSRSERINY 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,758
Number of Sequences: 438
Number of extensions: 3571
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)