Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0345
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02450.1 68417.m00332 glycine-rich protein similar to several...    62   3e-10
At3g03773.1 68416.m00384 expressed protein                             50   1e-06
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro...    29   2.6  
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro...    29   2.6  
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ...    29   3.4  
At4g39740.1 68417.m05626 electron transport SCO1/SenC family pro...    28   7.8  
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ...    28   7.8  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    28   7.8  
At1g60410.1 68414.m06801 F-box family protein contains F-box dom...    28   7.8  
At1g57590.1 68414.m06535 pectinacetylesterase, putative similar ...    28   7.8  

>At4g02450.1 68417.m00332 glycine-rich protein similar to several
           proteins containing a tandem repeat region such as
           Plasmodium falciparum GGM tandem repeat protein
           (GB:U27807)
          Length = 241

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
 Frame = +1

Query: 61  PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSI-TFKGICEPEKKMHEVLIPLYAEVDPK 234
           P V WA+   +IFLT  + + +   +N++P+ +  F     PE  ++E+ + L  +V+ +
Sbjct: 5   PEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKVNVE 64

Query: 235 KSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESG 390
           +S  +N G    +    EK +   W  L   KK  H++KVD+++W DED+ G
Sbjct: 65  ESK-INIGER-SIFCIIEKAEPERWNKLLRVKKPPHYVKVDWDKWVDEDDEG 114


>At3g03773.1 68416.m00384 expressed protein
          Length = 150

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
 Frame = +1

Query: 61  PSVSWAQRNARIFLTFNVECEKP-DINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKK 237
           P V WAQR+ +++LT  +   K   +  EP+ +        + +  E  + LY ++  + 
Sbjct: 5   PEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEY 64

Query: 238 SMWVNKGRLIEVLLAKEKVDEPYWPSLT-SDKKKHHWLKVDFNRWQDEDE 384
               N G L  ++ + +K +  +W  L  S++K   ++KVD+N+W DEDE
Sbjct: 65  RK--NVG-LRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDE 111


>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
           protein contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 148

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +1

Query: 277 LAKE--KVDEPYWPSLTSDKKKHHWLKVDFNRWQDED---ESGDDLDNMND 414
           L KE  K+    W S+T D+KK +  K      +DED   E  DD D+  D
Sbjct: 88  LVKEGSKIGWEMWKSMTEDEKKDYLDKAADEEDEDEDTVEEQADDSDDAED 138


>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
           protein contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 149

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +1

Query: 277 LAKE--KVDEPYWPSLTSDKKKHHWLKVDFNRWQDED---ESGDDLDNMND 414
           L KE  K+    W S+T D+KK +  K      +DED   E  DD D+  D
Sbjct: 89  LVKEGSKIGWEMWKSMTEDEKKDYLDKAADEEDEDEDTVEEQADDSDDAED 139


>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
           WD-40 repeats (PF0400); identical to WD-40 repeat
           protein MSI3 (SP:O22469) [Arabidopsis thaliana]
          Length = 424

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 205 IPLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYW-PSLTSDKKKHHWLKVD-FNRWQDE 378
           I L AE  P + ++ + G   ++       DEP+   S+  D     W   +   R  DE
Sbjct: 345 IELDAEDGPPELLFSHGGHKAKISDFAWNKDEPWVISSVAEDNSLQVWQMAESIYREDDE 404

Query: 379 DESGDDLDNMNDMFSDKD 432
           DE  DD  N N   S+++
Sbjct: 405 DEDDDDEGNQNAQHSNEN 422


>At4g39740.1 68417.m05626 electron transport SCO1/SenC family
           protein similar to SP|P23833 SCO1 protein, mitochondrial
           precursor {Saccharomyces cerevisiae}; contains Pfam
           profile PF02630: SCO1/SenC
          Length = 276

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 127 PDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKK 237
           PD+  E   +  K + + E K +E ++P++  +DP++
Sbjct: 149 PDVGPEQLKMMSKAVDKLESKHNEKILPVFVTLDPQR 185


>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
           similar to finger protein pcp1 GB:S48856 from [Solanum
           tuberosum]  contains Pfam domain, PF00096: Zinc finger,
           C2H2 type
          Length = 513

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -3

Query: 493 LLLHQSSNHPFHYLHQ----IECSYLCPKTCHSYCLNRLHF 383
           LL+HQS++HP H+ HQ    I  S     + +   +N LHF
Sbjct: 249 LLIHQSASHPHHH-HQTQPTINVSSSSSSSHNHNIINSLHF 288


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985];
           T20K24.13 has been merged with T20K24.12 per suggestion
           of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 118 CEKPDINIEPKSITFKGICEPEKKMHEVLIPL 213
           CEKP   +E       G CE +K+  ++++P+
Sbjct: 852 CEKPKQQVESVGDCKSGHCEKKKQAEDIVVPV 883


>At1g60410.1 68414.m06801 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 406

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 115 ECEKPDINIEPKSITFKGICE--PEK-KMHEV 201
           EC+ P + I+  S+ F  IC+  PE  K+H +
Sbjct: 223 ECDNPKVEIDSPSLEFMSICDKKPESLKIHRI 254


>At1g57590.1 68414.m06535 pectinacetylesterase, putative similar to
           pectinacetylesterase precursor GI:1431629 from [Vigna
           radiata]
          Length = 423

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 445 IECSYLCPKTCHSYCLNR 392
           I+C+Y C KTCH+    R
Sbjct: 406 IDCAYPCDKTCHNLVFRR 423


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,356,701
Number of Sequences: 28952
Number of extensions: 280292
Number of successful extensions: 871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)