Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0342
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    22   4.4  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.6  

>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 208 LEGGRSVPGSGRQHGRGPSHLFITN 282
           + GG  V GSG     GP +L   N
Sbjct: 80  IHGGDFVTGSGTSEMYGPDYLMSEN 104


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 515 YAFEDTLWAGLSD 553
           Y ++DTLW G  +
Sbjct: 315 YLYDDTLWVGFDN 327


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 214 GGRSVPGSGRQHGRGPSHL 270
           GGR  PG  R     P+HL
Sbjct: 327 GGRRGPGPARSRRHLPAHL 345


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 273 EEMTWPTTMLST*AGDTPASFKAP 202
           + M WP  +  T   D P+S ++P
Sbjct: 186 QPMLWPAWVYCTRYSDRPSSGRSP 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,421
Number of Sequences: 336
Number of extensions: 3491
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)