Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0342
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   139   3e-34
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    29   0.89 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   2.7  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   3.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.3  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   8.3  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  139 bits (337), Expect = 3e-34
 Identities = 74/184 (40%), Positives = 107/184 (58%)
 Frame = +2

Query: 107 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTD 286
           ++IV A RTP G+FGG F +  AT+L +IA  GAL+   + P+ VD + +G V+S++   
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANL-- 63

Query: 287 GIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQA 466
           G    R  AL AG+P+      +N++C SG ++ +  AQ I+TG A+I VAGG E+MS A
Sbjct: 64  GQNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNA 123

Query: 467 PFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYALQ 646
           P+     RFG   G     +  L  GLSD+Y GLPMG  AE    +  I R   D +A+ 
Sbjct: 124 PYYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHSIDRASQDAFAIS 183

Query: 647 SQQK 658
           S ++
Sbjct: 184 SYKR 187


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 430 DLGCAGQNVLSAVHDRLE-TRAAQSVDAEHRLLLRNTSFERRVTWRVDSVSL 278
           D       +   V + ++ T+ + + ++   LLL N+  + +++W +D+V L
Sbjct: 177 DFNLDDPQIFDVVSEHIDITQTSDAPNSNRNLLLNNSMLQEKISWYLDTVEL 228


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 240 STAWSWAKSSLHHKLTESTRHVTRRSKLVFLKRSRCSASTDCAALVSSRS 389
           +T W +   SLH  +  +    TR + LVFL++     + +CA     R+
Sbjct: 357 NTYWLYTTDSLHELVVNNE---TREASLVFLEKGDFEKALECANTAKVRN 403


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 134 PFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMV 253
           P G  G    + + T+ Q I  +  L    V PAQ+DS++
Sbjct: 270 PSGPMGMKTGSVNDTQSQQITLMNVLASQNVPPAQIDSIM 309


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 377  FQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNVRFGTALGTNYAFEDTL 535
            F S+ ++ Q  L   + ++     EN++   +A   + F   L T Y+FE TL
Sbjct: 1088 FPSLFHAIQATLEKVSNVNGKLNSENVAALRYADDTMSFLVTLQTTYSFELTL 1140


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 180 SVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVNVELKY 43
           SV+  +R     +PN     P    P  +A+ + N ++PV+ +L +
Sbjct: 755 SVSSNVRPINGSIPNAQPSVPGQAQPAAKANSVGNTSFPVDSKLAF 800


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,784
Number of Sequences: 5004
Number of extensions: 57365
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)