Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0342
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 128 4e-30
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 124 9e-29
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 88 6e-18
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 84 9e-17
02_05_0052 - 25433204-25434151 35 0.075
03_02_0167 - 6088818-6089870 33 0.17
07_03_0376 + 17437308-17437536,17438049-17438149,17438246-174384... 30 1.6
10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555... 30 2.1
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 2.1
04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141 29 3.7
04_04_0680 - 27217563-27220088 29 3.7
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 3.7
05_01_0382 + 2985526-2986659 29 4.9
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 28 6.5
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908... 28 6.5
07_03_0604 + 19903654-19904598 28 8.6
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 128 bits (309), Expect = 4e-30
Identities = 72/186 (38%), Positives = 104/186 (55%)
Frame = +2
Query: 101 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQ 280
+ + IVG RTP G G + AT+L ++A AL+ A V PA V + +G V+S++
Sbjct: 15 RDVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMGNVLSANL 74
Query: 281 TDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMS 460
G R AAL AG+P P +N++C SG ++++ +AQ I G + VAGG+E+MS
Sbjct: 75 --GQAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMS 132
Query: 461 QAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYA 640
AP V R G+ G + + L GL D Y PMGM AE Q I+R+E D YA
Sbjct: 133 NAPKYVAAARRGSRFGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSISREEQDLYA 192
Query: 641 LQSQQK 658
+QS ++
Sbjct: 193 IQSNER 198
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 124 bits (298), Expect = 9e-29
Identities = 72/186 (38%), Positives = 101/186 (54%)
Frame = +2
Query: 101 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQ 280
+ + +VG RTP G F G + SAT+L +IA ALK A V PA V + G V+S++
Sbjct: 9 RDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFGNVLSANL 68
Query: 281 TDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMS 460
G R AAL AGIP +N++C SG ++ + +AQ IL G I VAGG+E+MS
Sbjct: 69 --GQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGMESMS 126
Query: 461 QAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYA 640
AP + R G+ G + + L GL D Y MG AE +TR++ D YA
Sbjct: 127 NAPKYIAEARKGSRFGHDTLVDGMLKDGLWDVYGDFAMGNCAELCADNHALTREDQDAYA 186
Query: 641 LQSQQK 658
+QS ++
Sbjct: 187 IQSNER 192
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 88.2 bits (209), Expect = 6e-18
Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 1/185 (0%)
Frame = +2
Query: 107 IFIVGAKRTPF-GTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQT 283
+ IV A RT + G F++T A +L + + ++P++V +VVG V++
Sbjct: 51 VVIVAAYRTAICKSKRGGFKDTPAEDLLVPVFKALIDKTKLNPSEVGDIVVGTVLAPGSQ 110
Query: 284 DGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQ 463
I R AA AG P P++ +NR C SG Q++ N A +I G I +A G+E+M+
Sbjct: 111 RAIEC-RMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMT- 168
Query: 464 APFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYAL 643
V VR + L++ D C LPMG+T+E + +FGITR E D A+
Sbjct: 169 ----VNQVRLDGQVNPKV----ELFSQARD--CLLPMGLTSENVAKRFGITRMEQDQAAV 218
Query: 644 QSQQK 658
+S +K
Sbjct: 219 ESHRK 223
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 84.2 bits (199), Expect = 9e-17
Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 1/191 (0%)
Frame = +2
Query: 89 SASVKGIFIVGAKRTPF-GTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQV 265
SA + +V A RTP G F++T +L T+ L ++P ++ +VVG V
Sbjct: 43 SAYGDDVVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTV 102
Query: 266 ISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGG 445
+ I R AA AG+P+ PV +NR C SG Q++ + A I G I + G
Sbjct: 103 LGPGSQRAIEC-RAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAG 161
Query: 446 VENMSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDE 625
+E+MS A+G + C LPMG+T+E + ++G+TR E
Sbjct: 162 LESMSV-----------NAMGWEGQVNPKVNEVQKAQDCLLPMGITSENVAHRYGVTRQE 210
Query: 626 VDNYALQSQQK 658
D A +S ++
Sbjct: 211 QDQAAAESHRR 221
>02_05_0052 - 25433204-25434151
Length = 315
Score = 34.7 bits (76), Expect = 0.075
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = +2
Query: 83 IMSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQ 262
+ SA+ G+ + GT G+F N ++ ELQ I +G + G+SP Q +V G
Sbjct: 217 VTSAARGGVEVKEGDVVVAGT-DGLFDNVTSEELQRIVAMG--RALGLSPKQTADVVAGF 273
Query: 263 VISSSQTDGIYTP 301
+S T G TP
Sbjct: 274 AYEASTTMGRDTP 286
>03_02_0167 - 6088818-6089870
Length = 350
Score = 33.5 bits (73), Expect = 0.17
Identities = 32/112 (28%), Positives = 52/112 (46%)
Frame = +1
Query: 259 PSHLFITN*RNLHATSRGAQSWYSSREAGARHQQTVRLWFPVDREQRSGHFDRRSQDLSS 438
P L ++ R ATS+G + SS + GAR ++TVRL+ + + R QDL
Sbjct: 233 PPRLDMSFGRFTFATSQGVEEEGSSYDVGARGKRTVRLFVAAEGKPMYA-AGRGMQDLLE 291
Query: 439 GGSREHVASALRGQKREVRHGSGHQLRLRRHPLGRTLGLILRTPHGHDRREA 594
G +A +R + R GS +L R + + + RTP ++ +A
Sbjct: 292 SGGGLPLAVTVRARSRYRMVGSLVRLSYRHD--AQCVVRLRRTPRRNNAIDA 341
>07_03_0376 +
17437308-17437536,17438049-17438149,17438246-17438463,
17438544-17438901
Length = 301
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 167 TSATELQTIATVGALKEAGV--SPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIPQEK 340
T A L +A + A AG SP S V + S + P+H L A Q
Sbjct: 10 TVAGLLVAVAAIMAASPAGAQPSPGYYPSSVHRAMAFSRDYTNKWGPQHQTLSAD--QSS 67
Query: 341 PVLGINRLCGSGFQS 385
+ +++ CGSGF+S
Sbjct: 68 LTIWLDKTCGSGFKS 82
>10_02_0127 +
5555226-5555446,5555475-5555500,5555702-5555790,
5558112-5558843
Length = 355
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 323 GIPQEKPVLGIN-RLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNVR 490
G+P E P + R C S S A++ A++ G SQA +AV N +
Sbjct: 244 GVPGEAPAIAAEIRDCASASSSASGHAKETAAELARLDAMGDAAKGSQARWAVSNAK 300
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 319 SWYSSREAGARHQQTVRLWFPVDREQRSGHFDRRSQDLSSGGSRE 453
SWYSS AG ++ F + R G ++R++ + GG RE
Sbjct: 1353 SWYSSNSAGTQN-------FTIAGSSRPGEWNRKNNNRGQGGGRE 1390
>04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141
Length = 606
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 415 RRSQDLSSGGSREHVASALRGQKREVRHGSGHQLRLRRHP 534
RR+ L G +H AL +K V+HG H+ L HP
Sbjct: 433 RRNPKLRIGLYSQHFCDALPEEKSPVQHGQCHRECLDTHP 472
>04_04_0680 - 27217563-27220088
Length = 841
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 500 ALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYA 640
A+G NY +++ LW GLS S L G ++ A F + ++ N+A
Sbjct: 720 AIGHNY-YDEALWEGLSRSIPSLQKGPDKDE-EAGFAVDASKMGNFA 764
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 299 PRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILT 415
PR LK P+E I+R+C Q I++S Q I +
Sbjct: 249 PRTTKLKYRYPRESDHKNISRICREHLQEIISSQQKIFS 287
>05_01_0382 + 2985526-2986659
Length = 377
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 487 EVRHGSGHQL---RLRRHPLGRTLGLILRTPHGHDRREARSPVRNHQRR 624
E R G H+L + R PLGR + ++ PH E + +R H R
Sbjct: 267 EHRGGGDHRLIMLNMTREPLGRAISVLCIHPHAAPAAEMQCELRLHVSR 315
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 492 SARLWAPTTPSKTPSGPDSRTHTA 563
S+R+ APT+PS PS P S + ++
Sbjct: 100 SSRISAPTSPSSAPSSPSSSSSSS 123
>01_07_0008 +
40389744-40389896,40389967-40390048,40390693-40390808,
40391107-40391195,40391859-40391904,40392248-40392716,
40392825-40392952,40393182-40393253,40393512-40393885,
40394005-40394545,40394653-40394952,40395167-40395268
Length = 823
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/82 (21%), Positives = 36/82 (43%)
Frame = -1
Query: 403 LSAVHDRLETRAAQSVDAEHRLLLRNTSFERRVTWRVDSVSL**RDDLAHDHAVDLSRGH 224
++ H+RL+ +++ + +N++F+RR+ W +D D + H D+ G
Sbjct: 109 IAEAHERLKVDNVDALNCYYAHADKNSTFQRRIYWMLDPA----YDHIVFVHYRDVQEGS 164
Query: 223 SGLLQGTNRGYRLQFGRGCVAE 158
+ + Q G G AE
Sbjct: 165 ISVSALNDSSTSNQNGSGSRAE 186
>07_03_0604 + 19903654-19904598
Length = 314
Score = 27.9 bits (59), Expect = 8.6
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = +1
Query: 331 SREAGARHQQTVRL-WFPVDREQRSGH--FDRRSQDLSSGGSRE-HVASALRGQKREVRH 498
S+ G R ++ R+ PV R +R H RR ++ SR H GQ R R
Sbjct: 77 SKAPGGRRRRPRRVEGAPVHRARRLHHRRVRRRRVHVAVRSSRRRHGRRGEEGQGRRPRV 136
Query: 499 GSGHQLRLRRHPLGRTLGLILRTPHGHDRREA 594
+G QLR RR G G + G +A
Sbjct: 137 PAGAQLRRRRRAHGHGHGQVRAVRDGDGEGDA 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,693,234
Number of Sequences: 37544
Number of extensions: 478961
Number of successful extensions: 1708
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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