Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0342
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 2e-32
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 3e-30
SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1) 37 0.019
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76) 33 0.18
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35) 32 0.54
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 31 0.72
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 29 2.9
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) 29 5.0
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 28 8.8
>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 91.5 bits (217), Expect(2) = 2e-32
Identities = 44/94 (46%), Positives = 60/94 (63%)
Frame = +2
Query: 122 AKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTP 301
AKRT FG FGG ++ +AT L A+V A++ V PA VDS++ G V+ + D Y
Sbjct: 709 AKRTAFGAFGGRLKDFTATVLGEHASVAAMESGKVDPATVDSVIFGNVLQCAN-DAAYVA 767
Query: 302 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQ 403
RH +K+ +P P L +NRLCGSGFQSI++ AQ
Sbjct: 768 RHIGIKSKVPVTTPALTVNRLCGSGFQSIISGAQ 801
Score = 66.1 bits (154), Expect(2) = 2e-32
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = +2
Query: 524 EDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYALQSQQKW 661
EDTLW GL+D GLPMG+TAE L ++ ITR+E D +AL SQQ+W
Sbjct: 803 EDTLWQGLTDMLPGLPMGITAENLAEKYNITREECDQFALLSQQRW 848
>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 129 bits (311), Expect = 3e-30
Identities = 73/188 (38%), Positives = 105/188 (55%)
Frame = +2
Query: 101 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQ 280
+ + I A RTP G+ G + A EL +I AL A +SP V +++GQV+++ Q
Sbjct: 8 RDVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQVLTAGQ 67
Query: 281 TDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMS 460
G R AA+ AGIP P G+N LCGSG +++ Q + G + I VAGG E+MS
Sbjct: 68 GQG--PARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVVAGGQESMS 125
Query: 461 QAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYA 640
QAP ++R G + L GL DS+ MG+TAE + Q+ ++R+E DN+A
Sbjct: 126 QAPHCC-HMRPALKFGDMTLIDTMLKDGLMDSFNNYHMGITAENVAKQWEVSREEQDNFA 184
Query: 641 LQSQQKWE 664
L SQQ+ E
Sbjct: 185 LTSQQRTE 192
>SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1)
Length = 271
Score = 36.7 bits (81), Expect = 0.019
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 307 RGAQSWYSSREAGARHQQTVRLWFPVDREQRSGHFD-RRSQDLSSGGSREHVASALRGQK 483
RGAQ+W S +E ++ + + RSG+F+ R S D SSG R H AS R +
Sbjct: 28 RGAQNWSSPQERSWTSEE-----YGGEESYRSGNFEARESSDASSGSKRRHRASPHRHKY 82
Query: 484 REVRH 498
E RH
Sbjct: 83 HE-RH 86
>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
Length = 600
Score = 33.5 bits (73), Expect = 0.18
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +1
Query: 313 AQSWYSSREAGARHQQTVRLWFPVDREQRSGHFDRRSQDLSSGGSREHVASALRGQKREV 492
++S Y S E ++H +R + S DRR D+ GG +S + ++ +V
Sbjct: 401 SESVYESIEDNSQHNNRLRSVPRLGNTFESARRDRR--DVGEGGCHIAESSTMHAEESDV 458
Query: 493 RHGSGHQLRLRRHPLG 540
+ G G++L + H LG
Sbjct: 459 KVGQGNELPVVEHFLG 474
>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
Length = 415
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 530 TLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYALQSQQK 658
++ A CG G+ AE +++ ITR+E D+YA+ S ++
Sbjct: 45 SIMAAAQSLMCG-SQGVCAENAASKYNITREEQDDYAIHSYRR 86
Score = 31.5 bits (68), Expect = 0.72
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 326 IPQEKPVLGINRLCGSGFQSIVNSAQDILTGA 421
+P P IN++C SG +SI+ +AQ ++ G+
Sbjct: 26 LPISTPCTTINKVCASGMKSIMAAAQSLMCGS 57
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 202 WCLEGGRSVPGSGRQHGRGPSHLFITN*RNLH 297
W L GR VPG GR+ G S+ F++N LH
Sbjct: 65 WYLLAGRRVPGGGRKGGILGSNPFVSNSYKLH 96
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +1
Query: 388 REQRSGHFDRRSQDLSSGGSREHVASALR-----GQKREVRHGSGHQL 516
R++ + H + S+D + GSR+H+ R G + ++ HGS QL
Sbjct: 4515 RDRLNQHSNHGSRDRINRGSRDHINHGSRDHINHGSRDQINHGSSEQL 4562
>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
Length = 865
Score = 28.7 bits (61), Expect = 5.0
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +1
Query: 379 PVDREQRSGHFDRRSQDLSS---GGSREHVASALRGQKR-EVRHGSGHQLRLRRHPL-GR 543
PV+ +RSG + +S+D SS SRE + R +R R LR +R PL R
Sbjct: 392 PVEASKRSGSREGKSEDNSSLRRSRSRERNMARDRDDRRPPSRSRRDSSLRRQRSPLRNR 451
Query: 544 TLGLILRTPHGHDRREARSPVR 609
+ R+P RR RS R
Sbjct: 452 SPRWRGRSPSPRSRRRRRSSDR 473
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -2
Query: 198 VAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYT 70
VA+ S+V+ V + TPPK+P L T+ PL A +++ +T
Sbjct: 66 VALKESNVSPVPKTTPPKIPEEDLRPVTLTSPL--AKVMEGFT 106
>SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +2
Query: 269 SSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGV 448
+++ D R AA ++ P E+ V+ + S I+NS ++ + V V
Sbjct: 186 NNNNNDAEEVDREAATRSPSPNEQQVIQEDNKRQSRLAWIINSGKNTTNTLLPLQVVSDV 245
Query: 449 ENMSQAPFAVRNVRFGTALGTN 514
+N Q + +R R TN
Sbjct: 246 QNSEQVVYNLRRGRTIRPFPTN 267
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.9 bits (59), Expect = 8.8
Identities = 27/90 (30%), Positives = 37/90 (41%)
Frame = +1
Query: 334 REAGARHQQTVRLWFPVDREQRSGHFDRRSQDLSSGGSREHVASALRGQKREVRHGSGHQ 513
R R ++ R PV R +RS +RRS+ S GSRE S R +R +
Sbjct: 111 RSPSPRGRRRSRSRSPV-RRRRSPSLERRSR--SRSGSRERRRSPSRSPERRRERSFSNS 167
Query: 514 LRLRRHPLGRTLGLILRTPHGHDRREARSP 603
+ RH G DR ++RSP
Sbjct: 168 PKRERHSPDHRNG----NEGTRDRSQSRSP 193
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -2
Query: 288 PSVCDEEMTWPTTMLST*AGDTPASFK-----APTVAIVC 184
P VC E + WP T + + PA + A TV +VC
Sbjct: 738 PRVCKEALAWPVTRATKETAECPARLELVERLAQTVDLVC 777
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,994,461
Number of Sequences: 59808
Number of extensions: 484042
Number of successful extensions: 1483
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -