Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0342
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 225 2e-59
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 120 8e-28
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 113 2e-25
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 92 3e-19
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 75 4e-14
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 29 2.5
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 29 3.4
L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein. 29 3.4
AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock pr... 29 3.4
Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical pr... 29 4.4
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 7.8
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 7.8
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 225 bits (550), Expect = 2e-59
Identities = 108/188 (57%), Positives = 133/188 (70%)
Frame = +2
Query: 101 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQ 280
K +FIVGAKRT FGTFGG + SAT+L +A+ ALK A V VD ++ G V++SS+
Sbjct: 4 KCVFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVDHVIFGNVVASSR 63
Query: 281 TDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMS 460
DGIY RH LK+G+PQ L +NRLCGSGFQ++VN+AQ I G + I +AGG ENMS
Sbjct: 64 -DGIYLSRHIGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQAIKLGESNIVLAGGTENMS 122
Query: 461 QAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYA 640
PFAVR++RFGTALG Y FED LW LSD Y L MG TAEKLGAQ+ +TR E D +A
Sbjct: 123 MVPFAVRDIRFGTALGKKYEFEDMLWDSLSDPYAKLAMGQTAEKLGAQYKVTRQEADEFA 182
Query: 641 LQSQQKWE 664
L+SQ W+
Sbjct: 183 LRSQTLWK 190
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 120 bits (290), Expect = 8e-28
Identities = 69/188 (36%), Positives = 103/188 (54%)
Frame = +2
Query: 95 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISS 274
S K FIVGA RTP G+F + +A EL ++A AL+ V P+ + + +GQV +
Sbjct: 20 SNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQVCQA 79
Query: 275 SQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVEN 454
+ G R AAL AG+ V +N++C SG ++I+ +AQ I TG ++ GG+E+
Sbjct: 80 NA--GQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAIILAAQQIQTGHQDFAIGGGMES 137
Query: 455 MSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDN 634
MSQ PF V+ R G + + GL+D+Y + MG EK + GITR + D
Sbjct: 138 MSQVPFYVQ--RGEIPYGGFQVIDGIVKDGLTDAYDKVHMGNCGEKTSKEMGITRKDQDE 195
Query: 635 YALQSQQK 658
YA+ S +K
Sbjct: 196 YAINSYKK 203
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 113 bits (271), Expect = 2e-25
Identities = 67/190 (35%), Positives = 103/190 (54%), Gaps = 2/190 (1%)
Frame = +2
Query: 95 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISS 274
S K +FI+ RTP G + G F N A EL T+A A++ +GV+P +++ ++ G V+ +
Sbjct: 2 SDKKVFILSGARTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEVIGGCVLPA 61
Query: 275 SQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVEN 454
G R +L AG+P + +N++C S +++V +A +I G + G EN
Sbjct: 62 GL--GQNVTRQISLSAGLPVTTQAVTVNKVCSSSMKALVTAAVEIKAGYYDTILVVGTEN 119
Query: 455 MSQAPFAV--RNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEV 628
MSQ PF V + FG T+ +D GL D PMG+ AEK +GITR+E
Sbjct: 120 MSQVPFYVPRGEIPFGGIQMTDGISKD----GLEDIKEKGPMGLCAEKTVKDYGITREEQ 175
Query: 629 DNYALQSQQK 658
D YA++S +K
Sbjct: 176 DAYAIESYKK 185
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 92.3 bits (219), Expect = 3e-19
Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 2/174 (1%)
Frame = +2
Query: 95 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVD--SMVVGQVI 268
S K FIVGA RTP G+F + +A EL ++A AL+ V P+ + ++ +GQV
Sbjct: 98 SNKDAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFLGQVC 157
Query: 269 SSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGV 448
++ G + R AAL AG+ V +N+ SG ++I+ +AQ I TG +++ GG+
Sbjct: 158 HANA--GQASARQAALGAGLDLSVAVTTVNKGWSSGMKAIILAAQQIQTGHQDLAIGGGM 215
Query: 449 ENMSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFG 610
E+MSQ PF + V + Y E T+ G+SD + + + E+ G
Sbjct: 216 ESMSQVPFFLARVEQSS---NKYQVEQTVQDGISDFFDKQELCINGERTNGNIG 266
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 75.4 bits (177), Expect = 4e-14
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 17/206 (8%)
Frame = +2
Query: 83 IMSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQ 262
+ ++ I +V A RTPF G VF++ A +LQ A +++ + Q+D ++ G
Sbjct: 18 VAKKNMPNIVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQLDHIICGT 77
Query: 263 VISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAG 442
VI +T I R AAL AG+P + P + C S ++ + TG A +AG
Sbjct: 78 VIQECKTSNI--AREAALLAGVPDKIPAHTVTLACISSNVAMTTGMGMLATGNANAIIAG 135
Query: 443 GVENMSQAPFAV-RNVRFGTALGTNYAFE--DTLWAG--------------LSDSYCGLP 571
GVE +S P RN R LG N A + L G +++ G
Sbjct: 136 GVELLSDVPIRYNRNAR-KAMLGMNKAKDVPSKLKIGGQIVKNLLSPELPAVAEFSTGET 194
Query: 572 MGMTAEKLGAQFGITRDEVDNYALQS 649
MG + ++L A F ++R E D +A++S
Sbjct: 195 MGHSGDRLAAAFNVSRREQDEFAIRS 220
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 424 QDLSSGGSREHVASALRGQKREVRHGSGHQLRLRRHPLGRT 546
QD S++ SA G++ E GSGH +R HP T
Sbjct: 622 QDCHEMWSKKQKKSARLGRQAEGSSGSGHSIRATSHPRAPT 662
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 450 RTCRKRPSRSET*GSARLWAPTTPSKTPSGPDSRTHT 560
+T + S+S T G P TPSKTPS +R+ +
Sbjct: 55 KTPSRSASKSATRGRTASKTPKTPSKTPSSASARSRS 91
>L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein.
Length = 568
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/87 (26%), Positives = 38/87 (43%)
Frame = +2
Query: 185 QTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRL 364
Q IAT+ +K AG+ P+ + V G +S D + +AGI V+
Sbjct: 465 QPIATI--VKNAGLEPSSIIDEVTGNSNTSYGYDALNGKFVDMFEAGIIDPTKVVRTALQ 522
Query: 365 CGSGFQSIVNSAQDILTGAAKISVAGG 445
SG S++ + + ++T K GG
Sbjct: 523 DASGVASLLATTECVVTEIPKEEAVGG 549
>AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock
protein protein 60 protein.
Length = 568
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/87 (26%), Positives = 38/87 (43%)
Frame = +2
Query: 185 QTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRL 364
Q IAT+ +K AG+ P+ + V G +S D + +AGI V+
Sbjct: 465 QPIATI--VKNAGLEPSSIIDEVTGNSNTSYGYDALNGKFVDMFEAGIIDPTKVVRTALQ 522
Query: 365 CGSGFQSIVNSAQDILTGAAKISVAGG 445
SG S++ + + ++T K GG
Sbjct: 523 DASGVASLLATTECVVTEIPKEEAVGG 549
>Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical
protein R08H2.1 protein.
Length = 277
Score = 28.7 bits (61), Expect = 4.4
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Frame = +2
Query: 185 QTIATVGALKEAGVSPAQVDSMVVGQV-ISSSQTDGIYTPRHAALKAGIPQEKPVLGINR 361
++I G+ G S A + + QV I+ D + R LKAG+P EK +
Sbjct: 7 KSIIITGSSSGIGRSAAVIFAKEGAQVTITGRSADRLEETRLQILKAGVPAEKINAVVAD 66
Query: 362 LC-GSGFQSIVNSAQ------DILTGAAKISVAGGVENMSQA 466
+C SG ++ + DIL A + G N QA
Sbjct: 67 VCEASGQDEVIRTTLAKFGKIDILVNNAGALLTDGTSNTDQA 108
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 468 PSRSET*GSARLWAPTTPSKTPSGP 542
PS SE G++ ++PT+P+ +PS P
Sbjct: 1808 PSPSEQPGTSAQYSPTSPTYSPSSP 1832
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 468 PSRSET*GSARLWAPTTPSKTPSGP 542
PS SE G++ ++PT+P+ +PS P
Sbjct: 1815 PSPSEQPGTSAQYSPTSPTYSPSSP 1839
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,506,568
Number of Sequences: 27780
Number of extensions: 348563
Number of successful extensions: 1131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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