Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0342
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.96 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.9  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   5.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 195  AIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVN 58
            A+V SS + ++   PP  PNGV+   T+      A+   +   P N
Sbjct: 1188 ALVMSSESILVSWRPPSQPNGVITQYTVYTKADNAEEPTSQKVPPN 1233


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 208 LEGGRSVPGSGRQH 249
           L  G S PG+GR+H
Sbjct: 389 LVSGSSTPGTGREH 402


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 289 NLHATSRGAQSWYSSREAGARHQQTVRL 372
           +LH T    + W+ +R A A+  Q   +
Sbjct: 45  SLHLTETQVKIWFQNRRAKAKRLQEAEI 72


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 260 GPRPCCRPEPGTLRPPSRHQ 201
           G RP     PG ++PP++HQ
Sbjct: 108 GKRPA---SPGYVQPPTKHQ 124


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +1

Query: 499 GSGHQLRLRRHPLGRTLGLILRTPHGHDRREARSPVRNHQRRS*QLRSTIATEVGRL 669
           GS    +   H +G T+G     PH H   + +S    H R+   L  + ++ V  +
Sbjct: 331 GSSPHHQHGNHTMGPTMG----PPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSM 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,760
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)